RetrogeneDB ID: | retro_rnor_589 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:84960413..84960810(-) | ||
Located in intron of: | ENSRNOG00000020817 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cacybp | ||
Ensembl ID: | ENSRNOG00000002572 | ||
Aliases: | None | ||
Description: | Calcyclin-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q6AYK6] |
Percent Identity: | 79.26 % |
Parental protein coverage: | 57.64 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | EKPAAVVAPLTTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPAENVQVHFTERSFDLLVKNLNGKNYSM |
EKP.AVV..L.TGYT..ISNYG.DQ..KFVKIYITLTG.HQV.AENVQVHF.ER.FDLLVKNLNGKNYSM | |
Retrocopy | EKPDAVVTSLATGYTMEISNYGQDQ*VKFVKIYITLTGIHQVQAENVQVHFKERAFDLLVKNLNGKNYSM |
Parental | IVNNLLKPISVESSSKKVKTDT-VIILCRKKAENT-RW-DYLTQVEKECKEKEKPSYDTEADPSE |
IVNNLLKPISV.S.SK.VKTD..VIIL....AENT..W.DYLTQ..KECKEKEKPS.DTEADPSE | |
Retrocopy | IVNNLLKPISV*SNSKNVKTDK<VIIL*XXXAENTGNW<DYLTQMQKECKEKEKPS*DTEADPSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 58 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 50 .80 RPM |
SRP017611_liver | 45 .45 RPM | 30 .79 RPM |