RetrogeneDB ID: | retro_mmul_175 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 9:21529919..21530606(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000018296 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2491 | ||
Ensembl ID: | ENSMMUG00000001571 | ||
Aliases: | None | ||
Description: | calcyclin-binding protein [Source:RefSeq peptide;Acc:NP_001253590] |
Percent Identity: | 95.68 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQQKSQKKAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLSGVHQVPTENVQVHFTERSF |
MQQKSQKKAELLDNEK.AAVVAPITTGY.VK.SNYGWDQSDKFVKIYITLSGVHQVPTENVQVHFTERSF | |
Retrocopy | MQQKSQKKAELLDNEKLAAVVAPITTGYKVKSSNYGWDQSDKFVKIYITLSGVHQVPTENVQVHFTERSF |
Parental | DLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEKEKPSYDT |
DLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKV.NTRWDYLTQ.EKECKEKEKPSYDT | |
Retrocopy | DLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVKNTRWDYLTQLEKECKEKEKPSYDT |
Parental | ETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESREKQAKGDTEF |
ETD.SEGLMNVLKKIYEDGDDDMKRTI.KAWVESREKQ.KGDTEF | |
Retrocopy | ETDSSEGLMNVLKKIYEDGDDDMKRTIDKAWVESREKQSKGDTEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 75 .07 RPM |
SRP007412_brain_prefrontal_cortex | 0 .48 RPM | 67 .91 RPM |
SRP007412_cerebellum | 0 .06 RPM | 64 .06 RPM |
SRP007412_heart | 0 .00 RPM | 35 .68 RPM |
SRP007412_kidney | 0 .00 RPM | 28 .87 RPM |
SRP007412_liver | 0 .00 RPM | 8 .71 RPM |
SRP007412_testis | 0 .19 RPM | 30 .57 RPM |