RetrogeneDB ID: | retro_fcat_875 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:134813198..134813565(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CACYBP | ||
Ensembl ID: | ENSFCAG00000008591 | ||
Aliases: | None | ||
Description: | calcyclin binding protein [Source:HGNC Symbol;Acc:30423] |
Percent Identity: | 72.58 % |
Parental protein coverage: | 53.48 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | QLQKDLEEVKVLLEKATRKRVRDALTTEKSKIETEIKNKVQQ-KSQRKAELVDSEKPAAVVAPITTGYTV |
.LQKDLEEVKVLL.KATRKRVR..LTTEKSKIE.E.K.K..Q...QRKAEL.D..KPAAVVAPI.TGYTV | |
Retrocopy | KLQKDLEEVKVLLKKATRKRVRATLTTEKSKIEKETK-KMMQ>RNQRKAELLDNGKPAAVVAPIITGYTV |
Parental | KISNYGWDQSDKFVKIYITLTGVHQIPTENVQVHFTERSFDLLVKNLNGKSYSM |
KI.N...D..DK...I....T.VHQ..TENVQVHFTERSFDLLVKNLN.KSYS. | |
Retrocopy | KIGND**DRADKVM*IFTDVTRVHQLITENVQVHFTERSFDLLVKNLNEKSYSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 54 .63 RPM |
SRP017611_kidney | 0 .10 RPM | 57 .82 RPM |
SRP017611_liver | 0 .00 RPM | 30 .83 RPM |