RetrogeneDB ID: | retro_mmus_567 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:63412998..63413525(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cacybp | ||
Ensembl ID: | ENSMUSG00000014226 | ||
Aliases: | Cacybp, SIP | ||
Description: | calcyclin binding protein [Source:MGI Symbol;Acc:MGI:1270839] |
Percent Identity: | 85.47 % |
Parental protein coverage: | 75.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MASVLEELQKDLEEVKVLLEKSTRKRLRDTLTSE-KSKIETELKNKMQQKSQKKPELDNEKPAAVVAPL- |
MAS.LEELQKDLEEVKVLLE.STRKRL.DTLTSE.KSKIETELKNKMQQKSQKK.ELD.EKPAA..APL. | |
Retrocopy | MASALEELQKDLEEVKVLLETSTRKRLCDTLTSE>KSKIETELKNKMQQKSQKKTELDKEKPAAGDAPL< |
Parental | TTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLL-VKNLNGKNYSMIVNNLLKPI |
TTGYTVKISNYG.DQSDKFVKIYIT..GVHQVPTENVQVHFTE.SFDLL.V.NLNGKNYS.IVNNLLKPI | |
Retrocopy | TTGYTVKISNYGRDQSDKFVKIYITVPGVHQVPTENVQVHFTESSFDLL<VNNLNGKNYSRIVNNLLKPI |
Parental | SVESS---SKKVKTDTVIILCRKKAENTRWDYLTQVEKE |
SVESS......VKTDTVI.LCRKK..NTRWD.LTQVEKE | |
Retrocopy | SVESSXXXXXXVKTDTVISLCRKKEKNTRWDCLTQVEKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 46 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 41 .12 RPM |
SRP007412_heart | 0 .00 RPM | 31 .04 RPM |
SRP007412_kidney | 0 .02 RPM | 35 .25 RPM |
SRP007412_liver | 0 .00 RPM | 27 .58 RPM |
SRP007412_testis | 0 .05 RPM | 33 .34 RPM |