RetrogeneDB ID: | retro_itri_1539 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393533.1:769653..770188(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CACYBP | ||
Ensembl ID: | ENSSTOG00000010859 | ||
Aliases: | None | ||
Description: | calcyclin binding protein [Source:HGNC Symbol;Acc:30423] |
Percent Identity: | 81.77 % |
Parental protein coverage: | 80.72 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QKKPELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPAENVQVHFTERSFDLLVK |
.KKPELL.NEKPAAV.APITTGYT.KISNY.WDQSD.F.KIYITL.GVHQV...NVQVHFTERSFDLLVK | |
Retrocopy | RKKPELLGNEKPAAVCAPITTGYTMKISNYRWDQSDTFLKIYITLMGVHQVTTQNVQVHFTERSFDLLVK |
Parental | NLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKAENTRWEYLTQV-EKECKEKEKPSYDTETDP |
NLNGKSYSMI.N.LLKP.S.EGSSKKVKTDTVLILCRKKAENTRW.YLT.V..K..K..EKPS..TETDP | |
Retrocopy | NLNGKSYSMIMN-LLKPMSAEGSSKKVKTDTVLILCRKKAENTRWGYLTKV>QKNAK-REKPSEATETDP |
Parental | SEGLMNVLKKIYEDGDDDMKRTINKAWVESREKQAKGDTEF |
SEGLMNVLKKIY.DGDD.MK..IN...VESREKQAK.DTEF | |
Retrocopy | SEGLMNVLKKIYKDGDDVMK*AINTD*VESREKQAKEDTEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |