RetrogeneDB ID: | retro_cpor_581 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_2:36912817..36913493(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CACYBP | ||
Ensembl ID: | ENSCPOG00000012682 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.13 % |
Parental protein coverage: | 97.39 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QLQNDLEEVKTLLEKATRKRVRDALTAEKCKIETEIKNKMQQKSQKKPELHDSEKPAAVVAPITTGYTVK |
..QNDLEEVK.LLEK..RKRV.DALTAEK.KIETEIK.KMQ.K.QKKPEL.DSEK.AAVVAPITTGYTV. | |
Retrocopy | EMQNDLEEVKALLEKPARKRVCDALTAEKSKIETEIKTKMQ*KAQKKPELLDSEKLAAVVAPITTGYTVE |
Parental | IS-NYGWDQSDKFVKIYITLTGVHQVPAENVQVYFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSK |
IS.N.GWDQSDKF.K...TLTG.H.VPA.NVQV..TE.S.DLLVKNLN.KSYSMIV.NLLKP.SVE.... | |
Retrocopy | IS>NCGWDQSDKFMKNDTTLTGIHYVPAKNVQVQCTEMSLDLLVKNLNMKSYSMIVTNLLKPLSVERGXX |
Parental | KIKTDTVLILCRKKAENVQWEYLTQVEKECKEKEKPSYDAETDPSEGLMNVLKKIYEDGDDDMKRTINKA |
..KTD.VLILCRKK.EN..W..LTQVEKECKEKEKPSY..ETDPSEGLMNVL.K.YEDGD.DMK..INK. | |
Retrocopy | XXKTDIVLILCRKKMENT-WGCLTQVEKECKEKEKPSYNSETDPSEGLMNVLNKTYEDGDEDMKQAINK* |
Parental | WVESREKQAK--GDTEF |
........A....DTEF | |
Retrocopy | SLGGIKRKASQMRDTEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 43 .89 RPM |
SRP017611_kidney | 0 .10 RPM | 41 .98 RPM |
SRP017611_liver | 0 .00 RPM | 36 .34 RPM |
SRP040447_lung | 0 .33 RPM | 34 .43 RPM |
SRP040447_skeletal_muscle | 0 .03 RPM | 35 .18 RPM |