Parental gene:

CACYBP, ENSCJAG00000008989

Aliases:None
Description:calcyclin binding protein [Source:HGNC Symbol;Acc:30423]
Organism:Marmoset (Callithrix jacchus)
Coordinates:18:31995204..32008799(-)


>ENSCJAG00000008989
ATGGCTTCGGAAGAGCTACAGAAAGATCTAGAAGAGGTAAAGGTGTTGCTGGAAAAGACTACTAGGAAAAGAATACGAGA
TGCCCTTACAGCTGAAAAATCCAAGATTGAGACAGAAATCAAGAACAAGATGCAACAGAAATCACAGAAGAAAGCAGAGC
TTCTTGAAAATGAAAAGCCAGCTGCTGTGGTTGCTCCCATTACAACAGGCTATACAGTGAAAATCAGTAATTATGGATGG
GATCAGTCAGATAAGTTTGTGAAAATCTACATTACCTTAACTGGAGTTCATCAAGTTCCCACTGAGAATGTGCAGGTGCA
TTTCACAGAGAGGTCATTTGATCTTTTGGTAAAGAATCTAAATGGGAAGAGTTACTCCATGATTGTGAACAATCTCTTGA
AACCCATCTCTGTGGAAGGCAGTTCCAAAAAAGTCAAGACTGATACAGTTCTGATCTTATGTAGAAAGAAAGTGGAAAAC
ACAAGGTGGGATTACCTGACTCAGGTTGAAAAAGAGTGCAAAGAAAAAGAGAAGCCCTCCTATGACACTGAAACAGATCC
TAGTGAGGGATTGATGAATGTTCTAAAGAAAATTTATGAGGATGGAGATGATGATATGAAGCGAACCATTAATAAAGCCT
GGGTGGAATCGAGAGAGAAGCAAGCCAAAGGAGATACAGAATTTTGA

Library Parental gene expression (RPM)
SRP051959_colon 28 .64 RPM
SRP051959_heart 31 .38 RPM
SRP051959_kidney 37 .34 RPM
SRP051959_liver 35 .46 RPM
SRP051959_lung 46 .36 RPM
SRP051959_lymph_node 70 .00 RPM
SRP051959_skeletal_muscle 23 .54 RPM
SRP051959_spleen 48 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000170 ortholog_one2many 4 retrogenes
retro_amel_1094, retro_amel_1760, retro_amel_571, retro_amel_975,
Bos taurus ENSBTAG00000001107 ortholog_one2one 1 retrogene
retro_btau_1122,
Canis familiaris ENSCAFG00000029016 ortholog_one2one 1 retrogene
retro_cfam_1724,
Cavia porcellus ENSCPOG00000012682 ortholog_one2one 7 retrogenes
retro_cpor_1057, retro_cpor_1207, retro_cpor_1208, retro_cpor_1276, retro_cpor_1462, retro_cpor_581, retro_cpor_759,
Dasypus novemcinctus ENSDNOG00000015629 ortholog_one2one 1 retrogene
retro_dnov_915,
Dipodomys ordii ENSDORG00000001870 ortholog_one2one 1 retrogene
retro_dord_490,
Erinaceus europaeus ENSEEUG00000014973 ortholog_one2one 2 retrogenes
retro_eeur_431, retro_eeur_507,
Echinops telfairi ENSETEG00000009331 possible_ortholog 3 retrogenes
retro_etel_192, retro_etel_1921, retro_etel_766,
Felis catus ENSFCAG00000008591 ortholog_one2one 3 retrogenes
retro_fcat_539, retro_fcat_875, retro_fcat_954,
Homo sapiens ENSG00000116161 ortholog_one2one 2 retrogenes
retro_hsap_2355, retro_hsap_706,
Gorilla gorilla ENSGGOG00000005962 ortholog_one2one 2 retrogenes
retro_ggor_1788, retro_ggor_601,
Macropus eugenii ENSMEUG00000010725 ortholog_one2one 5 retrogenes
retro_meug_1472, retro_meug_1517, retro_meug_1751, retro_meug_236, retro_meug_95,
Macaca mulatta ENSMMUG00000001571 ortholog_one2many 1 retrogene
retro_mmul_175,
Mustela putorius furo ENSMPUG00000004813 ortholog_one2one 3 retrogenes
retro_mputfur_1058, retro_mputfur_1122, retro_mputfur_859,
Mus musculus ENSMUSG00000014226 ortholog_one2one 4 retrogenes
retro_mmus_1443, retro_mmus_2019, retro_mmus_2051, retro_mmus_567,
Nomascus leucogenys ENSNLEG00000015357 ortholog_one2one 3 retrogenes
retro_nleu_126, retro_nleu_2513, retro_nleu_318,
Oryctolagus cuniculus ENSOCUG00000004358 ortholog_one2one 3 retrogenes
retro_ocun_1249, retro_ocun_1362, retro_ocun_1852,
Otolemur garnettii ENSOGAG00000005375 ortholog_one2many 2 retrogenes
retro_ogar_2507, retro_ogar_2720,
Ochotona princeps ENSOPRG00000000316 ortholog_one2one 1 retrogene
retro_opri_674,
Procavia capensis ENSPCAG00000003742 ortholog_one2one 3 retrogenes
retro_pcap_237, retro_pcap_300, retro_pcap_449,
Pongo abelii ENSPPYG00000000486 ortholog_one2many 3 retrogenes
retro_pabe_207, retro_pabe_2130, retro_pabe_520,
Pan troglodytes ENSPTRG00000001705 ortholog_one2one 2 retrogenes
retro_ptro_1723, retro_ptro_505,
Rattus norvegicus ENSRNOG00000002572 ortholog_one2one 2 retrogenes
retro_rnor_2734, retro_rnor_589,
Ictidomys tridecemlineatus ENSSTOG00000010859 ortholog_one2one 4 retrogenes
retro_itri_1539, retro_itri_732, retro_itri_807, retro_itri_808,
Tursiops truncatus ENSTTRG00000010399 ortholog_one2one 1 retrogene
retro_ttru_682,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_964 84.82 97.81
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2. retro_cjac_975 87.77 67.80
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3. retro_cjac_2432 87.97 68.42
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4. retro_cjac_3336 89.34 52.63
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Download FASTA sequences of all ENSCJAG00000008989 retrocopies