RetrogeneDB ID: | retro_rnor_2734 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:59063540..59064182(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cacybp | ||
Ensembl ID: | ENSRNOG00000002572 | ||
Aliases: | None | ||
Description: | Calcyclin-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q6AYK6] |
Percent Identity: | 71.69 % |
Parental protein coverage: | 94.32 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | EVKVLLEKSTRKRLRDTLTNEKSKIETELRNKMQQKSQKKPEFDNEKPAAVVAPLTTGYTVKISNYGWDQ |
EV.VLLEKSTRKRL..TL..EKSKIE..L.N.MQQK.QKKPE.DNEKPAAVVAPL.TGYT.KISNYGWD. | |
Retrocopy | EVQVLLEKSTRKRL--TLISEKSKIESKLKNTMQQKTQKKPELDNEKPAAVVAPLRTGYTMKISNYGWD* |
Parental | SDKFVKIYITLTGVHQVPAENVQ-VHFTERS-FDLLVKNLNGKNYSMIVNNLLKPISVESSSKKVKTDT- |
SDKF..IYITLTG.HQV..ENVQ..H...RS.F......LNGKN.SM.VNNL.K.IS.ESSSKKVKTD.. | |
Retrocopy | SDKFARIYITLTGLHQVISENVQGRHISQRS>F*SFANSLNGKNDSMVVNNL*KAISMESSSKKVKTDK< |
Parental | VIILCRKKAENTRWDYLTQVEKECKEKEKPSYDTEADPSEGLMNVLKKIYEDGDDDMKRTINKAWVESRE |
VIIL..KKAENT.W.YLT.VEK.....EKPSYDTEAD...GLMN.LKK..E..DDD.K..INKAWV.SRE | |
Retrocopy | VIILFIKKAENTGWEYLTPVEKR-MQREKPSYDTEADSRKGLMNFLKKMFEATDDDRKQAINKAWVKSRE |
Parental | KQAREDTEF |
KQ.RED.EF | |
Retrocopy | KQVREDMEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 58 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 50 .80 RPM |
SRP017611_liver | 0 .00 RPM | 30 .79 RPM |