RetrogeneDB ID: | retro_ggor_1788 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2b:71707071..71707686(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000024061 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CACYBP | ||
Ensembl ID: | ENSGGOG00000005962 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.27 % |
Parental protein coverage: | 89.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RVRDALTAEKSKIETEIKNKMQQKSQKKAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITL |
RVRDALT.EK.................KAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITL | |
Retrocopy | RVRDALTTEKXXXXXXXXXXXXXXXXXKAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITL |
Parental | TGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRW |
TGVHQVP.ENVQVHFTERSFDLLVKNLN.KSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRW | |
Retrocopy | TGVHQVPIENVQVHFTERSFDLLVKNLNEKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRW |
Parental | DYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESREKQAKGDTEF |
DYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMK.TINKAWV.SREKQAKGDTEF | |
Retrocopy | DYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKQTINKAWVKSREKQAKGDTEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .53 RPM | 66 .08 RPM |
SRP007412_cerebellum | 0 .39 RPM | 36 .72 RPM |
SRP007412_heart | 0 .13 RPM | 5 .85 RPM |
SRP007412_kidney | 0 .00 RPM | 29 .69 RPM |
SRP007412_liver | 0 .03 RPM | 12 .85 RPM |
SRP007412_testis | 0 .31 RPM | 58 .33 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2355 |
Pan troglodytes | retro_ptro_1723 |
Pongo abelii | retro_pabe_2130 |