RetrogeneDB ID: | retro_fcat_539 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:80864821..80865163(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CACYBP | ||
Ensembl ID: | ENSFCAG00000008591 | ||
Aliases: | None | ||
Description: | calcyclin binding protein [Source:HGNC Symbol;Acc:30423] |
Percent Identity: | 75.83 % |
Parental protein coverage: | 51.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SKIETEIKNKVQQKSQRKAELVDSEKPA-AVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQIPTE |
S.IETE.KN.VQQ.SQRKAEL.DSEKP..AVVAP.T.GYTV.ISNYGW.QS.KFVK.Y.T.T.V.Q.P.E | |
Retrocopy | SSIETELKNTVQQRSQRKAELFDSEKPV>AVVAPTTVGYTVEISNYGWYQSGKFVKFYLT*TAV-QVPAE |
Parental | NVQVHFTERSFDL-LVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVL |
NV.VHFTERSFDL.LVKNLNGK..SMIVNNLLKP.SVE..SKK...DTVL | |
Retrocopy | NVRVHFTERSFDL<LVKNLNGKNESMIVNNLLKPVSVESRSKK---DTVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 54 .63 RPM |
SRP017611_kidney | 0 .00 RPM | 57 .82 RPM |
SRP017611_liver | 0 .00 RPM | 30 .83 RPM |