RetrogeneDB ID: | retro_cpor_1360 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_71:6077712..6078394(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJB6 | ||
Ensembl ID: | ENSCPOG00000013953 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily B, member 6 [Source:HGNC Symbol;Acc:14888] |
Percent Identity: | 67.24 % |
Parental protein coverage: | 99.57 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MVDYYEVLGVQRHASPEDIKKAYRKLALQWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGK |
M.DYY.VLGVQ....P.....AYR..AL.WHPD.N.ENK..AERKF.QVAEA.EV.SDAK......KYGK | |
Retrocopy | MLDYYGVLGVQT-MPP*GQQEAYRIFALLWHPDRNTENKV-AERKF*QVAEAREVSSDAKRMGHLCKYGK |
Parental | EGLNGGGGGGSHF-DSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFEDL-FGNRRGPRGSRNRGTG |
EG.NGGGGG.SHF...P...GF.F..PD.VFRE.F.G.DPF...FFEDPFE...FGN.R.PRGSR...TG | |
Retrocopy | EGVNGGGGGKSHF<PHPLNSGFKFWIPDEVFRELFSGWDPFLLIFFEDPFEEV<FGNQRRPRGSRSLDTG |
Parental | SFFSAFSGFPSFGGGFSAFDTGFTSFGSLGHGGLTSFSSTSFGGSGMGNFKSISTSTKIVNGRKITTKRI |
SFFS.FSGFPSFG..F..FD.GFTSFGSLGHGGLTSFSST.FG...MGN.K.ISTSTK..NG.KITTKRI | |
Retrocopy | SFFSVFSGFPSFGAEFYSFDAGFTSFGSLGHGGLTSFSST*FGSKEMGNLKFISTSTKVINGTKITTKRI |
Parental | VENGQERVEVEEDGQLKSLTIN |
V.N.QER.EV..DGQ..SLT.N | |
Retrocopy | VTNNQERTEVDRDGQSRSLTGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 60 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 46 .80 RPM |
SRP017611_liver | 0 .00 RPM | 32 .38 RPM |
SRP040447_lung | 0 .00 RPM | 52 .84 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 39 .10 RPM |