RetrogeneDB ID: | retro_ocun_240 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018734:1544570..1545500(+) | ||
Located in intron of: | ENSOCUG00000009642 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000009651 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000000064 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.54 % |
Parental protein coverage: | 75.38 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPDNKEEAERKFKQVAEAYEVLSDAQKRDIYDKYGK |
M.DYYEVLGVQR.ASPEDIKKAY.K.ALKWHPDKNP.NKEEAERKFK.VAEAYEVLS...KRDIYDKYGK | |
Retrocopy | MMDYYEVLGVQRYASPEDIKKAYHKVALKWHPDKNPENKEEAERKFKEVAEAYEVLSNDEKRDIYDKYGK |
Parental | EGLNGGGGGGSHFDAPFEFGFTFRNPEDVFREFFGGRDPFSFDFFEDPFEDFFGNRRGPRGSRSRGPGSF |
EGLN......SHFD...E..FTF..P.DVF.E.FG.RDPFSF.FFED.FE......R...GSRS.G...F | |
Retrocopy | EGLN--SEDRSHFDDECEHSFTFHKPDDVFKEIFGKRDPFSFHFFEDSFEELLKVPRSSYGSRSTGAEPF |
Parental | FSAFSGFPSFGSGFPSFDTGFTSFGSLGHGGLTSFSSTSFGGSGMGNFKSVSTSTKIVNGRKI-TTKRIV |
FS..S..P...S.F.S.D.G..S..SLG..G.TSFSS..F...GM.N...V.TS..I...R......... | |
Retrocopy | FSTPSEWPAWES-FSSYDRGYSSYSSLGQEGPTSFSSLAFDDNGMDNHICVTTSGQIAHDRNMGINTKLI |
Parental | ENGQERVEVEEDGQLKSLTINGVADEHALAEECLRR |
E..QER.EVE..G.L.....NGV.D....AE...RR | |
Retrocopy | ESDQER-EVEDYGELNPFLANGVVDIEGFAEHSWRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 33 .17 RPM |
SRP017611_kidney | 2 .84 RPM | 15 .10 RPM |
SRP017611_liver | 0 .00 RPM | 6 .09 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_163 |
Canis familiaris | retro_cfam_155 |
Equus caballus | retro_ecab_22 |