RetrogeneDB ID: | retro_cpor_1147 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_5:3126391..3127077(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJB6 | ||
Ensembl ID: | ENSCPOG00000013953 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily B, member 6 [Source:HGNC Symbol;Acc:14888] |
Percent Identity: | 93.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MVDYYEVLGVQRHASPEDIKKAYRKLALQWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGK |
MVDYYEVLGVQRHASPEDI.KAYRKLALQWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGK | |
Retrocopy | MVDYYEVLGVQRHASPEDI*KAYRKLALQWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGK |
Parental | EGLNGGGGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFEDLFGNRRGPR-GSRNRGTGS |
EGLNGGGGGGSHFDSPFEFGFTFRNPDDVFRE.FGGRDPFSFDFFEDPFED.FGNRRGP....R..G... | |
Retrocopy | EGLNGGGGGGSHFDSPFEFGFTFRNPDDVFRECFGGRDPFSFDFFEDPFEDIFGNRRGPQ<RNRGTGS-- |
Parental | FFSAFSGFPSFGGGFSAFDTGFTSFGSLGHGGLTSFSSTSFGGSGMGNFKSISTSTKIVNGRKITTKRIV |
FFS.FSGFPSFGGGFSAFDTGFTSFGSLGHGGLTSFSSTSFG.SGMGNFKSISTSTKIVN.RKITTKRIV | |
Retrocopy | FFSTFSGFPSFGGGFSAFDTGFTSFGSLGHGGLTSFSSTSFGSSGMGNFKSISTSTKIVNSRKITTKRIV |
Parental | ENGQERVEVEEDGQLKSLTING |
ENGQERVEVEEDGQLKSLTING | |
Retrocopy | ENGQERVEVEEDGQLKSLTING |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 60 .05 RPM |
SRP017611_kidney | 0 .10 RPM | 46 .80 RPM |
SRP017611_liver | 0 .04 RPM | 32 .38 RPM |
SRP040447_lung | 0 .15 RPM | 52 .84 RPM |
SRP040447_skeletal_muscle | 0 .08 RPM | 39 .10 RPM |