RetrogeneDB ID: | retro_mmus_435 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:47365646..47366372(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081185 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Dnajb6 | ||
Ensembl ID: | ENSMUSG00000029131 | ||
Aliases: | Dnajb6, Mrj, mDj4 | ||
Description: | DnaJ (Hsp40) homolog, subfamily B, member 6 [Source:MGI Symbol;Acc:MGI:1344381] |
Percent Identity: | 97.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVDYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGK |
MVDYYEVLGV.RHASPEDIKKAYRKQ.LKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGK | |
Retrocopy | MVDYYEVLGVRRHASPEDIKKAYRKQSLKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGK |
Parental | EGLNGGGGGGGIHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFDDFFGNRRGPRGNRSRGAGS |
EGLNGGGGGGGIHFDSPFEFGFTFRNPDDVFRE.FGGRDPFSFDFFEDPFDDFFGNRRGPRG.RS.GAGS | |
Retrocopy | EGLNGGGGGGGIHFDSPFEFGFTFRNPDDVFREIFGGRDPFSFDFFEDPFDDFFGNRRGPRGSRSQGAGS |
Parental | FFSTFSGFPSFGSGFPAFDTGFTPFGSLGHGGLTSFSSTSFGGSGMGNFKSISTSTKIVNGKKITTKRIV |
FFSTFSGFPSFGSGFPAFDTGFTPFGSLGHGGLTSFSSTSFG.SGMGNFKSISTSTKIVNGKKITTKRIV | |
Retrocopy | FFSTFSGFPSFGSGFPAFDTGFTPFGSLGHGGLTSFSSTSFGSSGMGNFKSISTSTKIVNGKKITTKRIV |
Parental | ENGQERVEVEEDGQLKSLTINGKEHLLRLDNK |
ENGQERVEVEEDGQLKSLTINGKEHLLR.DNK | |
Retrocopy | ENGQERVEVEEDGQLKSLTINGKEHLLRMDNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 19 .16 RPM |
SRP007412_cerebellum | 0 .00 RPM | 16 .15 RPM |
SRP007412_heart | 0 .00 RPM | 13 .64 RPM |
SRP007412_kidney | 0 .04 RPM | 16 .34 RPM |
SRP007412_liver | 0 .05 RPM | 18 .11 RPM |
SRP007412_testis | 0 .14 RPM | 121 .39 RPM |