RetrogeneDB ID: | retro_rnor_212 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:122619554..122620466(-) | ||
Located in intron of: | ENSRNOG00000019196 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000019187 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Dnajb6 | ||
Ensembl ID: | ENSRNOG00000010353 | ||
Aliases: | None | ||
Description: | DnaJ homolog subfamily B member 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6AYU3] |
Percent Identity: | 59.27 % |
Parental protein coverage: | 69.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVDYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGK |
MVDYYEVLGVQR.ASPEDIK.AYRK.ALKWHPDKNPENKEEAERKFK.VAEAYEVLS...KRDIYDKYGK | |
Retrocopy | MVDYYEVLGVQRYASPEDIKRAYRKVALKWHPDKNPENKEEAERKFKEVAEAYEVLSNGEKRDIYDKYGK |
Parental | EGLNGGGGGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFDDFFGNRRGPRGSRSRGAGS |
EGL.GGGG...SH.D...E.GFTFR..DDVF.E.FG.RDPFSF.FFED...D.....R...GSRSR..GS | |
Retrocopy | EGLTGGGG---SHLDDEREYGFTFRKADDVFKEIFGERDPFSFHFFEDSLADLLSSSRSSSGSRSR--GS |
Parental | FFSAFSGFPSFGSGFPAFDTGFTPFGSLGHGGLTSFSSASFGGSGMGNFKSISTSTKIVNGKKITTKRIV |
.FS.....P.F.......DTG..P..S.GH..LTS.SS..F...G.GN...I..S....NG....TK... | |
Retrocopy | LFSRSYDYPVF-ARLSSYDTGYSPYVSRGHESLTSVSSLAFEDPGVGNYIPITPS--VINGRNVKTKKTF |
Parental | ENGQERVEVEEDGQLKSLTINGVADENALAEECRRRGQ |
EN.QER..VE.D..L.S...N....E...A..C..R.Q | |
Retrocopy | ENRQER-KVEDDSELRSFLVN----EEGFADKCNWRRQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .14 RPM | 60 .03 RPM |
SRP017611_kidney | 0 .14 RPM | 34 .33 RPM |
SRP017611_liver | 0 .27 RPM | 15 .60 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_103 |
Gorilla gorilla | retro_ggor_210 |
Macaca mulatta | retro_mmul_165 |
Mus musculus | retro_mmus_171 |