RetrogeneDB ID: | retro_cpor_1352 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_71:7387676..7388102(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJB6 | ||
Ensembl ID: | ENSCPOG00000013953 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily B, member 6 [Source:HGNC Symbol;Acc:14888] |
Percent Identity: | 54.36 % |
Parental protein coverage: | 63.64 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | YGKEGLNGGGGGGSHFDS-PFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFEDLFGNRRGPRGSRNRG |
YGKEG.NGGGG.GSHF...PF..GF.F..PD.VFR..F.G.DPF.F.FFEDPFED.FGN...P....... | |
Retrocopy | YGKEGVNGGGGDGSHFSD<PFKSGFKFWIPDEVFRKLFSGKDPFLFIFFEDPFEDSFGNQ--PEEAEALI |
Parental | TGSFFSA-FSGFPSFGGGFSAFDTGFTSFGSLGHGGLTSFSSTSFGGSGMGNFKSISTSTKIVNGRKITT |
...FFS...S.F......F......F.S.G...HGGLTSFS.T.FG..GMGN...ISTSTK..NG.K..T | |
Retrocopy | QALFFSV>ISTFGA*FSSFNTGFSSFGSLG---HGGLTSFSCT*FGSKGMGNLQFISTSTKVINGTKTIT |
Parental | KRIVENGQE |
.RIV.N..E | |
Retrocopy | TRIVTNKEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 60 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 46 .80 RPM |
SRP017611_liver | 0 .00 RPM | 32 .38 RPM |
SRP040447_lung | 0 .00 RPM | 52 .84 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 39 .10 RPM |