Parental gene:

ENSCAFG00000005174

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:16:19806374..19847935(+)


>ENSCAFG00000005174
ATGGTGGATTACTATGAAGTTCTAGGCGTGCAGAGACATGCCTCAGCTGAGGATATTAAAAAGGCGTACCGGAAACTGGC
CCTAAAGTGGCATCCAGATAAAAACCCTGAAAATAAAGAAGAAGCAGAGAGGAAATTCAAGCAAGTAGCTGAGGCGTATG
AGGTGTTATCAGATGCAAAAAAACGGGACATCTATGACAGATACGGCAAAGAAGGACTAAATGGTGGAGGTGGAGGTGGA
CTTCATTTTGACACTCCATTTGAGTTTGGCTTCACATTCCGTAACCCAGATGATGTCTTCAGGGAATTTTTTGGTGGAAG
GGACCCGTTTTCCTTTGACTTCTTTGAAGACCCATTTGAGGACTTCTTTGGGAGCCGAAGAGGCCCCCGTGGGAGCAGGA
ACCGAGGCACGGGGTCATTCTTCTCCGCCTTCAGTGGATTTCCGTCTTTTGGAGGAGGGTTTTCTTCTTTTGATACAGGA
TTTACTTCCTTCGCATCGCCAGGTCACGGGGGCCTCACTTCGTTCTCTTCCACGACATTTGGTGGTAGTGGGATGGGCAA
CTTCAAATCTATATCCACTTCTACTAAAATGGTTAATGGCAGAAAAATCACTACAAAGAGAATTGTGGAGAATGGTGAAG
AAAGAGTAGAAGTTGAAGAGAACGGCCAGTTAAAGTCCTTAACGATAAATGGTGTGGCGGACGAGCTCGCGTTCCTGGAG
GAGTGCCAGCGCAGAGGCCAGAGTGCGCTGCCCTCCCAGCCCGCCGGCAGCAGCGGCCAGTCGCCGAGGGCACAGAGGCC
GGCCTCCCTGCCCAAACCCGAGCCTCATGACATCGCTGAAGAGGATGAGCCAGGCCGACAGCGAGCCACCCACAGCCTCT
GGGACCCCTCACTGCTCTCTGCAGGGTTCAAAGAAGGTGGCAAGAGGAAGAAGCAGAAGCAGAGAGAGGAGTCCAAGAAG
AAGAAGGCGACCAAAGGCAACCACTAG

Library Parental gene expression (RPM)
SRP017611_brain 36 .04 RPM
SRP017611_kidney 23 .05 RPM
SRP017611_liver 8 .85 RPM
SRP012049_cerebellum 46 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001332 ortholog_one2one 3 retrogenes
retro_amel_127, retro_amel_685, retro_amel_95,
Bos taurus ENSBTAG00000000771 possible_ortholog 3 retrogenes
retro_btau_163, retro_btau_222, retro_btau_248,
Canis familiaris ENSCAFG00000020317 within_species_paralog 1 retrogene
retro_cfam_809,
Callithrix jacchus ENSCJAG00000005288 possible_ortholog 7 retrogenes
retro_cjac_104, retro_cjac_1455, retro_cjac_1648, retro_cjac_1692, retro_cjac_2922, retro_cjac_3880, retro_cjac_948,
Cavia porcellus ENSCPOG00000013953 possible_ortholog 17 retrogenes
retro_cpor_1035, retro_cpor_1074, retro_cpor_1147, retro_cpor_1352, retro_cpor_1360, retro_cpor_1364, retro_cpor_259, retro_cpor_325, retro_cpor_38, retro_cpor_40, retro_cpor_538, retro_cpor_610, retro_cpor_720, retro_cpor_793, retro_cpor_814, retro_cpor_840, retro_cpor_952,
Equus caballus ENSECAG00000009005 possible_ortholog 2 retrogenes
retro_ecab_105, retro_ecab_22,
Felis catus ENSFCAG00000015654 ortholog_one2one 2 retrogenes
retro_fcat_1072, retro_fcat_91,
Homo sapiens ENSG00000105993 possible_ortholog 9 retrogenes
retro_hsap_103, retro_hsap_166, retro_hsap_2399, retro_hsap_2400, retro_hsap_4031, retro_hsap_519, retro_hsap_54, retro_hsap_889, retro_hsap_939,
Gorilla gorilla ENSGGOG00000004703 possible_ortholog 6 retrogenes
retro_ggor_1819, retro_ggor_201, retro_ggor_210, retro_ggor_251, retro_ggor_478, retro_ggor_719,
Loxodonta africana ENSLAFG00000013384 possible_ortholog 4 retrogenes
retro_lafr_105, retro_lafr_107, retro_lafr_260, retro_lafr_468,
Microcebus murinus ENSMICG00000009760 possible_ortholog 1 retrogene
retro_mmur_474,
Myotis lucifugus ENSMLUG00000009123 possible_ortholog 4 retrogenes
retro_mluc_1371, retro_mluc_147, retro_mluc_304, retro_mluc_333,
Macaca mulatta ENSMMUG00000003176 possible_ortholog 6 retrogenes
retro_mmul_1050, retro_mmul_165, retro_mmul_2326, retro_mmul_243, retro_mmul_379, retro_mmul_970,
Mustela putorius furo ENSMPUG00000009797 ortholog_one2one 4 retrogenes
retro_mputfur_1084, retro_mputfur_11, retro_mputfur_1199, retro_mputfur_70,
Mus musculus ENSMUSG00000029131 possible_ortholog 6 retrogenes
retro_mmus_113, retro_mmus_171, retro_mmus_2023, retro_mmus_3273, retro_mmus_435, retro_mmus_870,
Nomascus leucogenys ENSNLEG00000001380 possible_ortholog 5 retrogenes
retro_nleu_1524, retro_nleu_2, retro_nleu_2063, retro_nleu_2820, retro_nleu_52,
Oryctolagus cuniculus ENSOCUG00000000064 possible_ortholog 2 retrogenes
retro_ocun_240, retro_ocun_83,
Otolemur garnettii ENSOGAG00000010640 ortholog_one2one 2 retrogenes
retro_ogar_248, retro_ogar_3412,
Pongo abelii ENSPPYG00000018228 possible_ortholog 4 retrogenes
retro_pabe_100, retro_pabe_2165, retro_pabe_226, retro_pabe_669,
Pelodiscus sinensis ENSPSIG00000018102 possible_ortholog 1 retrogene
retro_psin_19,
Pteropus vampyrus ENSPVAG00000000155 possible_ortholog 1 retrogene
retro_pvam_24,
Rattus norvegicus ENSRNOG00000010353 possible_ortholog 6 retrogenes
retro_rnor_1680, retro_rnor_1930, retro_rnor_212, retro_rnor_2673, retro_rnor_60, retro_rnor_641,
Ictidomys tridecemlineatus ENSSTOG00000002964 possible_ortholog 7 retrogenes
retro_itri_1090, retro_itri_1143, retro_itri_169, retro_itri_54, retro_itri_74, retro_itri_832, retro_itri_85,
Tupaia belangeri ENSTBEG00000009586 ortholog_one2one 7 retrogenes
retro_tbel_1521, retro_tbel_1533, retro_tbel_1571, retro_tbel_1978, retro_tbel_3918, retro_tbel_4142, retro_tbel_67,
Tarsius syrichta ENSTSYG00000005448 possible_ortholog 4 retrogenes
retro_tsyr_1358, retro_tsyr_297, retro_tsyr_360, retro_tsyr_491,
Tursiops truncatus ENSTTRG00000013929 ortholog_one2one 2 retrogenes
retro_ttru_1864, retro_ttru_637,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_8 72.53 70.43
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2. retro_cfam_155 62.50 75.61
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3. retro_cfam_201 61.37 70.43
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4. retro_cfam_527 96.24 56.71
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5. retro_cfam_2085 58.86 50.91
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6. retro_cfam_2131 64.40 56.71
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Download FASTA sequences of all ENSCAFG00000005174 retrocopies