RetrogeneDB ID: | retro_cpor_1035 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_4:21989257..21989786(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJB6 | ||
Ensembl ID: | ENSCPOG00000013953 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily B, member 6 [Source:HGNC Symbol;Acc:14888] |
Percent Identity: | 78.21 % |
Parental protein coverage: | 76.62 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | VLSDAKKRDIYDKYGKEGLNGGGGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFE-DLF |
VLS.AKK..I.DKY.KEGLN.GGG..SHFDSPFEFGFTF.NPD.VFREF.G.RDPFS.DFFEDPFE.D.F | |
Retrocopy | VLSNAKKWHIWDKYRKEGLNSGGGRISHFDSPFEFGFTF*NPDGVFREFLGCRDPFSLDFFEDPFE<DIF |
Parental | GNRRGPRGSRNRGTGSFFSAFSGFPSFGGG-FSAFDTGFTSFGSLGHGGLTSFSSTSFGGSGMGNFKSIS |
GN..GP.GSR....GSFFSAFSG.PSFGG.....F.TGFTSFGSL.HGGLTSFSSTSF.GSGM.NFKSIS | |
Retrocopy | GN*KGP*GSRSHSEGSFFSAFSGLPSFGGE<MFSFGTGFTSFGSLAHGGLTSFSSTSFDGSGMSNFKSIS |
Parental | TSTKIVNGRKITTKRIVENGQERVEVEEDGQLKSLTING |
TS.KI.N.R.ITTKRIVENGQERV..EE.GQLKSLTING | |
Retrocopy | TSIKIINSRIITTKRIVENGQERVGGEEVGQLKSLTING |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 60 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 46 .80 RPM |
SRP017611_liver | 0 .00 RPM | 32 .38 RPM |
SRP040447_lung | 0 .00 RPM | 52 .84 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 39 .10 RPM |