RetrogeneDB ID: | retro_cjac_1648 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 18:41671242..41671738(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000005288 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.19 % |
Parental protein coverage: | 50.31 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | YGKEGLNGGGGGGL-HFDSPFEFGFTFRNPEDVFRECFGGRDPFSFDFFEDPFEEFFGNRRGPRGSRSRG |
YGKEGLN........HFDSPFEFG.T.RNP.DVFR..FGGRDPFSFDFFED.FE.FFGN.RGP.GSRS.G | |
Retrocopy | YGKEGLNXXXXXXXSHFDSPFEFGVTSRNPDDVFRVFFGGRDPFSFDFFEDTFEDFFGNPRGPQGSRS*G |
Parental | TGAFFSAFSGFPSFGSAFPSFDT-GFTSFGSLGHGGLTSFSSASFAGSGMGNFKSVSTSTKIVN--GRKI |
.G..FS.FSGFPSFGS.FPSFDT.GFTSFGSLG.GG.TSFSS.S..GSGMGNFKS.STSTK.V....RKI | |
Retrocopy | MGS-FSMFSGFPSFGSRFPSFDT>GFTSFGSLGYGGFTSFSSTSSGGSGMGNFKSISTSTKEVRY*KRKI |
Parental | TTKRIVENGEERVEVEEDGQLKSLTING |
TTK.IVENG.ERVEV.ED.QLKSLT.NG | |
Retrocopy | TTKSIVENGQERVEV-EDYQLKSLTKNG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 27 .53 RPM |
SRP051959_heart | 0 .00 RPM | 24 .05 RPM |
SRP051959_kidney | 0 .02 RPM | 23 .27 RPM |
SRP051959_liver | 0 .00 RPM | 26 .36 RPM |
SRP051959_lung | 0 .00 RPM | 26 .60 RPM |
SRP051959_lymph_node | 0 .00 RPM | 26 .87 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 33 .37 RPM |
SRP051959_spleen | 0 .00 RPM | 24 .87 RPM |