RetrogeneDB ID: | retro_cpor_1529 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_94:2010383..2010652(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPC | ||
Ensembl ID: | ENSCPOG00000008563 | ||
Aliases: | None | ||
Description: | U1 small nuclear ribonucleoprotein C [Source:UniProtKB/TrEMBL;Acc:H0VCM4] |
Percent Identity: | 60.44 % |
Parental protein coverage: | 55.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGP-PPPGMMPVGPAPGMRPPMGGHMPMMPGPPM |
P..AGA.I.P....PGP...G.MPA.HMGG....P..G..PPPGMM.VGPAP.M..P.GGH.P.MP.PPM | |
Retrocopy | PAWAGAVILPLTQSPGPSLSGTMPALHMGGHATLPRLGS<PPPGMMLVGPAPAMSSPVGGHLPAMPEPPM |
Parental | MRPPARPMMVPTRPGMTRPDR |
.R..A.P.MVPT.PGMT.PDR | |
Retrocopy | TRSRAQPTMVPTGPGMTGPDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 25 .96 RPM |
SRP017611_liver | 0 .00 RPM | 18 .11 RPM |
SRP040447_lung | 0 .00 RPM | 24 .77 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 29 .13 RPM |