RetrogeneDB ID: | retro_fcat_1265 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:48914133..48914604(+) | ||
Located in intron of: | ENSFCAG00000026175 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPC | ||
Ensembl ID: | ENSFCAG00000005876 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157] |
Percent Identity: | 78.62 % |
Parental protein coverage: | 98.74 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SRFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPP |
S.FYC.YC.TYL.HDSPSVRKT..SGRKHKENVKDYYQKWMEEQAQSLI.KT.A.FQ.GKI.PT.FS.PP | |
Retrocopy | SKFYCNYCNTYLNHDSPSVRKTQSSGRKHKENVKDYYQKWMEEQAQSLINKTAATFQRGKISPT*FSVPP |
Parental | PAG-AMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMR |
P.G.AMIPPPPSL.G.P.PGMMPAPHMGGP.MMPMMGPPPPGMMPVGPAPGMRPPM.G..P.MP.PPMMR | |
Retrocopy | PKG<AMIPPPPSLLGLPCPGMMPAPHMGGPSMMPMMGPPPPGMMPVGPAPGMRPPM*GQLPIMPEPPMMR |
Parental | P-PARPMMVPTRPGMTRPD |
P.P..PM.VP..PG....D | |
Retrocopy | P>PTYPMIVPSWPGKSQQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .66 RPM |
SRP017611_liver | 0 .00 RPM | 6 .37 RPM |