RetrogeneDB ID: | retro_fcat_446 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:106486056..106486492(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPC | ||
Ensembl ID: | ENSFCAG00000005876 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157] |
Percent Identity: | 64.9 % |
Parental protein coverage: | 91.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RFYCDYCDTYLTHDSPSVRKTHCSGRKHK-ENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPP |
.FYCDY.D.YLTHDSPSVRKTHCSGRKHK.ENV...YQKWM.EQAQSL....TA.FQQ.KIP.TP.S.PP | |
Retrocopy | KFYCDY*DMYLTHDSPSVRKTHCSGRKHK<ENVQ-AYQKWMGEQAQSLTHRATAVFQQAKIPLTPSSVPP |
Parental | PAG-AMIPPP---PSLPGPPRPGMMPAPHMGG-PPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGP |
PAG.AMIPPP...PSLPGPP.PGMMPAPH.GG.PP...M.G...PGM.P..P..G..P.M.G...M.P.. | |
Retrocopy | PAG<AMIPPPHPTPSLPGPPGPGMMPAPHIGGLPPPGRMPGGTVPGMRP--PIRGHTPMMSGSPVMRPPT |
Parental | PMMRPPARPMM |
..M..P..P.M | |
Retrocopy | CPMTVPTWPGM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .66 RPM |
SRP017611_liver | 0 .00 RPM | 6 .37 RPM |