RetrogeneDB ID: | retro_mmul_2314 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:141629867..141630344(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.633 | ||
Ensembl ID: | ENSMMUG00000000869 | ||
Aliases: | None | ||
Description: | U1 small nuclear ribonucleoprotein C [Source:UniProtKB/Swiss-Prot;Acc:F6TFD9] |
Percent Identity: | 98.74 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAP |
MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAP | |
Retrocopy | MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAP |
Parental | PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMR |
PPAGAMIPPPPSLPGPP.PGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMR.PMGGHMPMMPGPPMMR | |
Retrocopy | PPAGAMIPPPPSLPGPPCPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRLPMGGHMPMMPGPPMMR |
Parental | PPARPMMVPTRPGMTRPDR |
PPARPMMVPTRPGMTRPDR | |
Retrocopy | PPARPMMVPTRPGMTRPDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 3 .47 RPM |
SRP007412_brain_prefrontal_cortex | 0 .32 RPM | 13 .17 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .00 RPM |
SRP007412_heart | 0 .12 RPM | 5 .12 RPM |
SRP007412_kidney | 0 .12 RPM | 5 .16 RPM |
SRP007412_liver | 0 .04 RPM | 5 .11 RPM |
SRP007412_testis | 0 .49 RPM | 18 .58 RPM |