RetrogeneDB ID: | retro_fcat_627 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:74169926..74170402(-) | ||
Located in intron of: | ENSFCAG00000013313 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000031775 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPC | ||
Ensembl ID: | ENSFCAG00000005876 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157] |
Percent Identity: | 94.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LSRFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAP |
...FYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLI.KTTAAFQQGKIPPTPFSAP | |
Retrocopy | MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLINKTTAAFQQGKIPPTPFSAP |
Parental | PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMR |
PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMM.VGPAPGMR.PMGGHMPMMPGPPMMR | |
Retrocopy | PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMSVGPAPGMRLPMGGHMPMMPGPPMMR |
Parental | PPARPMM-VPTRPGMTRPDR |
PPARPMM..PT.PGMTRPDR | |
Retrocopy | PPARPMM<GPTWPGMTRPDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .90 RPM | 8 .95 RPM |
SRP017611_kidney | 3 .71 RPM | 8 .66 RPM |
SRP017611_liver | 3 .03 RPM | 6 .37 RPM |