RetrogeneDB ID: | retro_cpor_552 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_19:3146073..3146451(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSCPOG00000025759 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.69 % |
Parental protein coverage: | 75.72 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | TTIVRVCEATYDTTLVEKEGIHVFDWPFDDGAPPSNQIVDDWLNLVKIKFRE-EPGCCIAVHCVAGLGRA |
.T.V..C...YD...V.KEGI.V.DWPFDDG.P.SNQI.DDWLN..K.KF.E.EPGCCI.VH.VA.L..A | |
Retrocopy | STLVQICDTVYDKAPV*KEGIYVLDWPFDDGVPSSNQILDDWLNHLKTKFLE<EPGCCIVVHYVARLRQA |
Parental | PVLVALALIEGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPK-MRLR-FKDSNGHRNNCCMQ |
PV.VALALI..GMKYED...FIRQKRR..F..KQLLYL.KY.PK.MRL....D.N.....CC.Q | |
Retrocopy | PVSVALALIKCGMKYEDTDHFIRQKRR-TFICKQLLYLKKYQPK<MRLY<LRDNN---RRCCVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 27 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .45 RPM |
SRP017611_liver | 0 .00 RPM | 21 .28 RPM |
SRP040447_lung | 0 .00 RPM | 27 .29 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 37 .03 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002275 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000025759 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000008183 | 6 retrocopies | |
Latimeria chalumnae | ENSLACG00000007183 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000006572 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000001162 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002777 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018701 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000440 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006311 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000004938 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000016743 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000011771 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000046370 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000009956 | 14 retrocopies | |
Tursiops truncatus | ENSTTRG00000004129 | 6 retrocopies | |
Vicugna pacos | ENSVPAG00000004277 | 9 retrocopies |