RetrogeneDB ID: | retro_pabe_255 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:74296832..74297349(+) | ||
Located in intron of: | ENSPPYG00000000479 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSPPYG00000016743 | ||
Aliases: | PTP4A1, PRL1 | ||
Description: | protein tyrosine phosphatase type IVA 1 [Source:RefSeq peptide;Acc:NP_001126324] |
Percent Identity: | 83.82 % |
Parental protein coverage: | 99.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTALVEKEGIHVLDWPFD |
ARMN.PAPV.VTYKNMRF.ITHNPTN.TLNKFIEELKKYG..TIVRVCEA.YDT.LVEKEGIHVL.WPF. | |
Retrocopy | ARMNHPAPVKVTYKNMRFPITHNPTNVTLNKFIEELKKYGAATIVRVCEAAYDTTLVEKEGIHVLKWPFG |
Parental | DGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQ-FIRQKRRGA |
DGAPP..QIV.D.L..VKIKFREEPGC.IAVHC..GLGRAPVLVAL.LIEGGMK.EDAVQ.FI.QK.RGA | |
Retrocopy | DGAPPFKQIVADGLHFVKIKFREEPGCYIAVHCTVGLGRAPVLVALTLIEGGMKHEDAVQ>FIGQKQRGA |
Parental | FNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ |
F.SKQLLYLE.Y.PKMRLRFKDSNGH.NNCCIQ | |
Retrocopy | FKSKQLLYLERYHPKMRLRFKDSNGHINNCCIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 29 .36 RPM |
SRP007412_cerebellum | 0 .00 RPM | 24 .56 RPM |
SRP007412_heart | 0 .00 RPM | 30 .52 RPM |
SRP007412_kidney | 0 .00 RPM | 31 .12 RPM |
SRP007412_liver | 0 .00 RPM | 310 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_479 |
Pan troglodytes | retro_ptro_360 |
Gorilla gorilla | retro_ggor_452 |