RetrogeneDB ID: | retro_btau_1186 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 29:9175981..9176500(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000046374 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSBTAG00000002275 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA 1 [Source:RefSeq peptide;Acc:NP_001193053] |
Percent Identity: | 88.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARMNRPAPVEVTYRNMRFLITHNPTNATLSKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPF |
MA..NRPAPVEVTYRNMRFLITHNPT.ATLSKFIE.LKKYGVTTIVRVCEATYDT.LVEKEGI.VLDWPF | |
Retrocopy | MAPLNRPAPVEVTYRNMRFLITHNPTSATLSKFIEDLKKYGVTTIVRVCEATYDTALVEKEGIQVLDWPF |
Parental | DDGAPPSNQIVDDWLSLVKIKFREDPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGA |
DDG..PSNQIVDDWLSL..IKFRE.PGCCIAVHCVAGLGR.PVLVALAL.EGGMK.E.AVQFIRQKRRGA | |
Retrocopy | DDGSSPSNQIVDDWLSLLNIKFREEPGCCIAVHCVAGLGRTPVLVALALMEGGMKNEEAVQFIRQKRRGA |
Parental | FNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ |
FNSKQLLYLEKY..KMRL.FKDS.GHRNNCC.Q | |
Retrocopy | FNSKQLLYLEKYHSKMRLCFKDSSGHRNNCCVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 58 .47 RPM |
ERP005899_muscle | 0 .00 RPM | 28 .29 RPM |
SRP017611_brain | 0 .23 RPM | 35 .26 RPM |
SRP017611_kidney | 0 .06 RPM | 38 .05 RPM |
SRP017611_liver | 0 .00 RPM | 38 .28 RPM |
SRP030211_testis | 35 .54 RPM | 69 .82 RPM |