RetrogeneDB ID: | retro_lafr_670 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_3:11403155..11403580(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSLAFG00000006572 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.78 % |
Parental protein coverage: | 82.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVR-VCEATYDTALVEKEGIHVLDWP |
MA.MN.PAPVE.T.KNMR.LITHNPTN.TLN.FIEELKKY.VTTIVR.V.EATYDTA.VE.EGIHVL.WP | |
Retrocopy | MALMNHPAPVEITQKNMRYLITHNPTNVTLNEFIEELKKYRVTTIVR<VWEATYDTAVVEREGIHVLGWP |
Parental | FDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGSRAPVLVALALIEGGMKYEDAVQFIRQKRR |
.DD..PPSNQ.VDDWLSLVKIKF.EEPGCCIAVHCV.GLG...PVLV.LAL.EG.M..ED.V.FIRQK.. | |
Retrocopy | YDDCPPPSNQVVDDWLSLVKIKFHEEPGCCIAVHCVSGLG-KVPVLVPLALTEGRMR*EDMVRFIRQKWC |
Parental | GAFN |
G.FN | |
Retrocopy | GDFN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |