RetrogeneDB ID:

retro_dnov_1150

Retrocopy
location
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_155271:1261..1486(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SNRPG
Ensembl ID:ENSDNOG00000019446
Aliases:None
Description:small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:11163]


Retrocopy-Parental alignment summary:






>retro_dnov_1150
ATGAGCAAAGCTCACCTGCCCAAGTTGGAAAAAATCCACAGACAAGAAGTTATCATTGAAATTAAATGGCAGACACATCC
AAGGAATATTGTGGGATTTGATCCTTTTATAGATCTTGTGATGGATGAACATGTGGAGATGGCAACTTGTGGGCAACAGA
ACAATATTGGAATGGTGGTAACAAGAGGAAATGGTCTCATCATGTTAGAAGCCTTGGTGAAAGTA

ORF - retro_dnov_1150 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.64 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMSKAHPPEL-KKFMDKKLSLKLNGGRHVQGILR-GFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSII
MSKAH.P.L.KK..DKKLSLKLNG.RH.QGIL..GFDPF..LV.DE.VEMAT.GQQNNIGMVV.RGN..I
RetrocopyMSKAHLPKL>KKSTDKKLSLKLNG-RHIQGILW<GFDPFIDLVMDEHVEMATCGQQNNIGMVVTRGNGLI
ParentalMLEALERV
MLEAL..V
RetrocopyMLEALVKV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP012922_ascending_colon 0 .00 RPM 37 .34 RPM
SRP012922_cerebellum 0 .00 RPM 15 .67 RPM
SRP012922_heart 0 .00 RPM 21 .81 RPM
SRP012922_kidney 0 .00 RPM 22 .73 RPM
SRP012922_liver 0 .00 RPM 15 .64 RPM
SRP012922_lung 0 .00 RPM 30 .24 RPM
SRP012922_quadricep_muscle 0 .00 RPM 12 .29 RPM
SRP012922_spleen 0 .00 RPM 37 .54 RPM
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_1150 was not experimentally validated.

Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 170 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG0000001931318 retrocopies
Dasypus novemcinctus ENSDNOG00000019446 18 retrocopies
Felis catus ENSFCAG000000081188 retrocopies
Microcebus murinus ENSMICG0000001536910 retrocopies
Myotis lucifugus ENSMLUG000000264903 retrocopies
Macaca mulatta ENSMMUG000000079613 retrocopies
Monodelphis domestica ENSMODG000000115281 retrocopy
Mustela putorius furoENSMPUG000000072212 retrocopies
Mus musculus ENSMUSG000000572781 retrocopy
Nomascus leucogenys ENSNLEG000000101821 retrocopy
Oryctolagus cuniculus ENSOCUG000000112142 retrocopies
Pongo abelii ENSPPYG0000001232414 retrocopies
Rattus norvegicus ENSRNOG000000165071 retrocopy
Sus scrofa ENSSSCG000000247761 retrocopy
Ictidomys tridecemlineatus ENSSTOG0000000865411 retrocopies
Tupaia belangeri ENSTBEG0000001738166 retrocopies
Vicugna pacos ENSVPAG0000000745210 retrocopies



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