RetrogeneDB ID: | retro_cjac_897 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 11:22582878..22583106(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000019313 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.42 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIML |
MSKAHP.ELKKFMDKKLSLKLNGGRHVQ...RGFDPFMNLV.DECVEMATSGQQNNIGMVVIRGNSIIML | |
Retrocopy | MSKAHPLELKKFMDKKLSLKLNGGRHVQRTVRGFDPFMNLVLDECVEMATSGQQNNIGMVVIRGNSIIML |
Parental | EALERV |
EALERV | |
Retrocopy | EALERV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 9 .05 RPM |
SRP051959_heart | 0 .00 RPM | 7 .89 RPM |
SRP051959_kidney | 0 .02 RPM | 12 .20 RPM |
SRP051959_liver | 0 .00 RPM | 9 .44 RPM |
SRP051959_lung | 0 .02 RPM | 8 .25 RPM |
SRP051959_lymph_node | 0 .00 RPM | 9 .00 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 8 .12 RPM |
SRP051959_spleen | 0 .00 RPM | 9 .37 RPM |