RetrogeneDB ID:

retro_mmul_1021

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:13:28455971..28456195(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MMU.18325
Ensembl ID:ENSMMUG00000007961
Aliases:None
Description:small nuclear ribonucleoprotein G [Source:RefSeq peptide;Acc:NP_001180369]


Retrocopy-Parental alignment summary:






>retro_mmul_1021
AGCAAAGTTCACCCTCATGAGCTGAAAAACATTATGGACAAGAAGCTATCATTGAAATTAAACAGTGGCAGACATGTCCA
AGGAATACTGCGAGGATTTATCCCTTTATGAATCTTGTGATAGATGAATGTGTGGAGATGGCAACTAGCGAGCAACAGAA
CAATATTGGAATGGTGGTAACATGAGGGAATAGTATCATCACGTTAGAAGCCTTGGAACAAGTA

ORF - retro_mmul_1021 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.21 %
Parental protein coverage: 98.68 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFD-PFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIML
SK.HP.ELK..MDKKLSLKLN.GRHVQGILRGF..PFMNLVIDECVEMATS.QQNNIGMVV..GNSII.L
RetrocopySKVHPHELKNIMDKKLSLKLNSGRHVQGILRGFI<PFMNLVIDECVEMATSEQQNNIGMVVT*GNSIITL
ParentalEALERV
EALE.V
RetrocopyEALEQV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 1 .34 RPM
SRP007412_brain_prefrontal_cortex 0 .00 RPM 3 .57 RPM
SRP007412_cerebellum 0 .00 RPM 1 .42 RPM
SRP007412_heart 0 .00 RPM 2 .47 RPM
SRP007412_kidney 0 .00 RPM 2 .35 RPM
SRP007412_liver 0 .00 RPM 1 .70 RPM
SRP007412_testis 0 .00 RPM 1 .32 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1021 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1021 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_1021 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Callithrix jacchus retro_cjac_1227

Parental genes homology:
Parental genes homology involve 32 parental genes, and 283 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000160009 retrocopies
Canis familiaris ENSCAFG0000003259514 retrocopies
Choloepus hoffmanni ENSCHOG000000001303 retrocopies
Callithrix jacchus ENSCJAG0000001931318 retrocopies
Cavia porcellus ENSCPOG000000250226 retrocopies
Dasypus novemcinctus ENSDNOG0000001944618 retrocopies
Dipodomys ordii ENSDORG000000056232 retrocopies
Equus caballus ENSECAG000000199895 retrocopies
Echinops telfairi ENSETEG0000001002812 retrocopies
Felis catus ENSFCAG000000081188 retrocopies
Homo sapiens ENSG0000014397712 retrocopies
Gorilla gorilla ENSGGOG000000221693 retrocopies
Loxodonta africana ENSLAFG000000023013 retrocopies
Microcebus murinus ENSMICG0000001536910 retrocopies
Myotis lucifugus ENSMLUG000000264903 retrocopies
Macaca mulatta ENSMMUG00000007961 3 retrocopies
retro_mmul_1021 , retro_mmul_2048, retro_mmul_300,
Monodelphis domestica ENSMODG000000115281 retrocopy
Mustela putorius furoENSMPUG000000072212 retrocopies
Mus musculus ENSMUSG000000572781 retrocopy
Nomascus leucogenys ENSNLEG000000101821 retrocopy
Oryctolagus cuniculus ENSOCUG000000112142 retrocopies
Otolemur garnettii ENSOGAG0000001530013 retrocopies
Ochotona princeps ENSOPRG000000010936 retrocopies
Pongo abelii ENSPPYG0000001232414 retrocopies
Pan troglodytes ENSPTRG0000001202911 retrocopies
Pteropus vampyrus ENSPVAG000000048553 retrocopies
Rattus norvegicus ENSRNOG000000165071 retrocopy
Sus scrofa ENSSSCG000000247761 retrocopy
Ictidomys tridecemlineatus ENSSTOG0000000865411 retrocopies
Tupaia belangeri ENSTBEG0000001738166 retrocopies
Tarsius syrichta ENSTSYG0000000572911 retrocopies
Vicugna pacos ENSVPAG0000000745210 retrocopies



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