RetrogeneDB ID: | retro_fcat_1092 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:63027298..63027516(+) | ||
Located in intron of: | ENSFCAG00000014089 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000008118 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.38 % |
Parental protein coverage: | 96.05 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMAT-SGQQNNIGMVVIRGNSIIM |
MSKA.P.ELK.FMDKKLSLKLN.GRH.QGIL.GF.PF.NLVIDECV.MAT..GQQ.N..MVVI.GNS.IM | |
Retrocopy | MSKAYPVELKTFMDKKLSLKLNCGRHFQGILQGFSPFLNLVIDECVQMAT<CGQQHNMRMVVI*GNSVIM |
Parental | LEAL |
LEAL | |
Retrocopy | LEAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 4 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .45 RPM |
SRP017611_liver | 0 .10 RPM | 3 .74 RPM |