RetrogeneDB ID: | retro_dnov_1521 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_22565:47618..47822(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM167A | ||
Ensembl ID: | ENSDNOG00000003073 | ||
Aliases: | None | ||
Description: | transmembrane protein 167A [Source:HGNC Symbol;Acc:28330] |
Percent Identity: | 60. % |
Parental protein coverage: | 92.96 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SAIFNFQSLLTVILLLICTCAYIRSLAPSLLDRNKTGLLGI-FWKCAR-IGER--KSPYVAVCCIVMAFS |
..IF.FQSLLTVILLL...CAYI.SLA.SLLDR.KT.LLG..FWK.AR...ER....PY.A..C.....S | |
Retrocopy | ACIFTFQSLLTVILLLLGICAYIPSLALSLLDRKKTRLLGV>FWKLAR<VSERVLMLPYAAQ*CTSVSCS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 2 .92 RPM |
SRP012922_cerebellum | 0 .00 RPM | 0 .41 RPM |
SRP012922_heart | 0 .00 RPM | 0 .70 RPM |
SRP012922_kidney | 0 .00 RPM | 1 .37 RPM |
SRP012922_liver | 0 .00 RPM | 0 .77 RPM |
SRP012922_lung | 0 .00 RPM | 1 .53 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .87 RPM |
SRP012922_spleen | 0 .00 RPM | 1 .60 RPM |