RetrogeneDB ID: | retro_mmus_381 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:159428957..159429169(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tmem167 | ||
Ensembl ID: | ENSMUSG00000012422 | ||
Aliases: | None | ||
Description: | transmembrane protein 167 [Source:MGI Symbol;Acc:MGI:1913324] |
Percent Identity: | 79.17 % |
Parental protein coverage: | 98.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSAIFN-FQSLLTVILLLICTCAYIRSLAPSILDRNKTGLLGIFWKCARIGERKSPYVAICCIVMAFSIL |
.SAIFN.FQSLLTVILLLIC.CAYIRSLA.S.LDRNK...LGIF.KC.R.GE.KSP.V.ICC.VMAFSIL | |
Retrocopy | VSAIFN<FQSLLTVILLLICMCAYIRSLASSFLDRNKSVQLGIFCKCPRVGEHKSPDVSICCTVMAFSIL |
Parental | FI |
FI | |
Retrocopy | FI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 42 .96 RPM |
SRP007412_cerebellum | 0 .00 RPM | 32 .26 RPM |
SRP007412_heart | 0 .00 RPM | 11 .89 RPM |
SRP007412_kidney | 0 .00 RPM | 21 .54 RPM |
SRP007412_liver | 0 .00 RPM | 30 .39 RPM |
SRP007412_testis | 0 .00 RPM | 8 .46 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_933 |