RetrogeneDB ID: | retro_ocun_659 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 13:90644294..90644474(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM167A | ||
Ensembl ID: | ENSOCUG00000009326 | ||
Aliases: | None | ||
Description: | transmembrane protein 167A [Source:HGNC Symbol;Acc:28330] |
Percent Identity: | 65. % |
Parental protein coverage: | 83.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VILLLICTCAYIRSLAPSVLDRNKTGLLGIFWKCARIGERKSPYVAVCCVVMAFSILFMQ |
VI.LLIC.CAY..SLA.S.LDRNKT.LLGIF.....I...K.PY...CCVVMAFSI.F.Q | |
Retrocopy | VIFLLICSCAYFQSLASSLLDRNKTELLGIF*MFTGINGWKDPYGVLCCVVMAFSIFFIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .03 RPM |
SRP017611_liver | 0 .00 RPM | 8 .02 RPM |