Parental gene:

TMEM167A, ENSSSCG00000029173

Aliases:None
Description:transmembrane protein 167A [Source:HGNC Symbol;Acc:28330]
Organism:Pig (Sus scrofa)
Coordinates:2:93411266..93426964(-)


>ENSSSCG00000029173
TCTGCCATTTTCAACTTTCAGAGTCTGTTGACTGTAATCTTGCTGCTTATATGTACCTGTGCTTATATCCGATCCTTGGC
ACCCAGCCTCCTGGACAGAAATAAAACTGGATTGTTGGGTATATTTTGGAAGTGTGCTAGAATTGGTGAACGCAAGAGTC
CTTATGTTGCAGTATGCTGTGTTGTGATGGCCTTCAGCATCCTCTTCATACAG

Library Parental gene expression (RPM)
SRP014902_placenta 3 .45 RPM
SRP014902_testis 3 .25 RPM
SRP018288_heart 6 .84 RPM
SRP018288_kidney 11 .92 RPM
SRP018288_liver 12 .63 RPM
SRP018288_lung 3 .36 RPM
SRP018856_adipose 7 .35 RPM
SRP035408_brain 4 .86 RPM
SRP035408_liver 9 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000039591 ortholog_one2one 3 retrogenes
retro_btau_497, retro_btau_500, retro_btau_852,
Canis familiaris ENSCAFG00000029436 ortholog_one2one 1 retrogene
retro_cfam_904,
Choloepus hoffmanni ENSCHOG00000012009 ortholog_one2one 14 retrogenes
retro_chof_1306, retro_chof_1548, retro_chof_1558, retro_chof_1681, retro_chof_1778, retro_chof_196, retro_chof_2109, retro_chof_2288, retro_chof_2444, retro_chof_2476, retro_chof_2663, retro_chof_2708, retro_chof_333, retro_chof_622,
Callithrix jacchus ENSCJAG00000011238 ortholog_one2many 3 retrogenes
retro_cjac_2328, retro_cjac_318, retro_cjac_929,
Cavia porcellus ENSCPOG00000026186 ortholog_one2one 2 retrogenes
retro_cpor_1123, retro_cpor_310,
Dasypus novemcinctus ENSDNOG00000003073 ortholog_one2one 21 retrogenes
retro_dnov_1345, retro_dnov_1443, retro_dnov_1521, retro_dnov_1612, retro_dnov_1633, retro_dnov_1648, retro_dnov_1756, retro_dnov_1852, retro_dnov_1888, retro_dnov_202, retro_dnov_2118, retro_dnov_2347, retro_dnov_2628, retro_dnov_319, retro_dnov_356, retro_dnov_448, retro_dnov_550, retro_dnov_806, retro_dnov_924, retro_dnov_948, retro_dnov_979,
Dipodomys ordii ENSDORG00000015882 ortholog_one2one 2 retrogenes
retro_dord_425, retro_dord_665,
Equus caballus ENSECAG00000026834 ortholog_one2one 2 retrogenes
retro_ecab_690, retro_ecab_995,
Erinaceus europaeus ENSEEUG00000001023 ortholog_one2one 2 retrogenes
retro_eeur_295, retro_eeur_457,
Echinops telfairi ENSETEG00000016490 ortholog_one2one 11 retrogenes
retro_etel_1079, retro_etel_1325, retro_etel_1617, retro_etel_1788, retro_etel_1817, retro_etel_1849, retro_etel_2072, retro_etel_276, retro_etel_706, retro_etel_897, retro_etel_959,
Felis catus ENSFCAG00000012375 ortholog_one2one 4 retrogenes
retro_fcat_1548, retro_fcat_180, retro_fcat_1986, retro_fcat_512,
Homo sapiens ENSG00000174695 ortholog_one2one 2 retrogenes
retro_hsap_1969, retro_hsap_4937,
Gorilla gorilla ENSGGOG00000024191 ortholog_one2many 1 retrogene
retro_ggor_185,
Loxodonta africana ENSLAFG00000009206 ortholog_one2one 1 retrogene
retro_lafr_1075,
Myotis lucifugus ENSMLUG00000008924 ortholog_one2one 3 retrogenes
retro_mluc_1281, retro_mluc_846, retro_mluc_884,
Monodelphis domestica ENSMODG00000025616 ortholog_one2many 3 retrogenes
retro_mdom_1169, retro_mdom_136, retro_mdom_862,
Mus musculus ENSMUSG00000012422 ortholog_one2one 9 retrogenes
retro_mmus_1220, retro_mmus_1988, retro_mmus_2520, retro_mmus_2898, retro_mmus_2899, retro_mmus_295, retro_mmus_2999, retro_mmus_381, retro_mmus_944,
Oryctolagus cuniculus ENSOCUG00000009326 ortholog_one2one 2 retrogenes
retro_ocun_1788, retro_ocun_659,
Otolemur garnettii ENSOGAG00000009040 ortholog_one2one 4 retrogenes
retro_ogar_1134, retro_ogar_1817, retro_ogar_2709, retro_ogar_2752,
Ochotona princeps ENSOPRG00000004516 ortholog_one2one 2 retrogenes
retro_opri_1158, retro_opri_231,
Pan troglodytes ENSPTRG00000017053 ortholog_one2many 1 retrogene
retro_ptro_13,
Rattus norvegicus ENSRNOG00000016686 ortholog_one2one 3 retrogenes
retro_rnor_1754, retro_rnor_2049, retro_rnor_933,
Sorex araneus ENSSARG00000005120 ortholog_one2one 3 retrogenes
retro_sara_379, retro_sara_478, retro_sara_515,
Sarcophilus harrisii ENSSHAG00000011984 ortholog_one2one 4 retrogenes
retro_shar_209, retro_shar_262, retro_shar_599, retro_shar_627,
Tupaia belangeri ENSTBEG00000002432 ortholog_one2one 3 retrogenes
retro_tbel_1430, retro_tbel_2962, retro_tbel_4129,
Tarsius syrichta ENSTSYG00000010018 ortholog_one2one 1 retrogene
retro_tsyr_1844,
Tursiops truncatus ENSTTRG00000009033 ortholog_one2one 2 retrogenes
retro_ttru_1375, retro_ttru_750,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_351 90.14 100.00
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2. retro_sscr_1077 90.28 100.00
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Download FASTA sequences of all ENSSSCG00000029173 retrocopies