RetrogeneDB ID: | retro_fcat_180 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:137054479..137054692(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM167A | ||
Ensembl ID: | ENSFCAG00000012375 | ||
Aliases: | None | ||
Description: | transmembrane protein 167A [Source:HGNC Symbol;Acc:28330] |
Percent Identity: | 87.32 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SAIFNFQSLLTVILLLICTCAYIRSLAPSLLDRNKTGLLGIFWKCARIGERKSPYVAVCCIVMAFSILFI |
SAIFNFQS.LTVILLLI..CAYI.SLA.SLLDRNKTGLLGIFWKC.RIGE.KS.YVAVCCIVMAFS.LFI | |
Retrocopy | SAIFNFQSQLTVILLLIYSCAYIPSLAHSLLDRNKTGLLGIFWKCSRIGEQKSLYVAVCCIVMAFSFLFI |
Parental | Q |
Q | |
Retrocopy | Q |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 11 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .17 RPM |
SRP017611_liver | 0 .00 RPM | 8 .29 RPM |