RetrogeneDB ID: | retro_eeur_457 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_311860:4901..5101(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM167A | ||
Ensembl ID: | ENSEEUG00000001023 | ||
Aliases: | None | ||
Description: | transmembrane protein 167A [Source:HGNC Symbol;Acc:28330] |
Percent Identity: | 63.24 % |
Parental protein coverage: | 88.89 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SLLTVILLLICTCAYIRSLAPTILDRNKTGLLGIFWKCARIGERKSPYVAVCC---VVMAFSIL-FMQ |
SLL.VILL....CA.I.SLAP..L.RNKTGLL.I.WKCA.IGE..S..VAV.C......AFSIL.FMQ | |
Retrocopy | SLLAVILLFLQACAHI*SLAPSLLGRNKTGLLDIYWKCAKIGE*QSICVAVYCYIPIAVAFSIL<FMQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 11 .76 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .19 RPM |
SRP017611_liver | 0 .00 RPM | 9 .97 RPM |