RetrogeneDB ID: | retro_dnov_965 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_127862:5566..5966(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPMT | ||
Ensembl ID: | ENSDNOG00000004842 | ||
Aliases: | None | ||
Description: | thiopurine S-methyltransferase [Source:HGNC Symbol;Acc:12014] |
Percent Identity: | 60.29 % |
Parental protein coverage: | 54.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KAVEMRWFADRGHSVVGVEISELGIKEFFTEQNLSYSEEPISEIPGAKAFKXXXXXXXXXXXXXXXXXXV |
KA.....FAD.GH..V.VEIS.LGI..FFTE.NLSYSEEP..EIPGAK.FK..................V | |
Retrocopy | KAFGTSRFADQGHTKVVVEISVLGIQ*FFTEENLSYSEEPTAEIPGAKVFKSSLGNISLHCCSIFYLSRV |
Parental | NIGKFDRIWDRGALVAINPGDRERYADIMLS-LMRKGFHYLVSVFSYDPTKHAG-PPFYVPETEIK |
.I.K.DRIW.RG.LVAINPGD.E.YA..MLS.L.RKGF.YL.SV.SYDP.KHAG.P.F..P.TEIK | |
Retrocopy | KISKYDRIWERGILVAINPGDQEHYAVTMLS<LTRKGFYYLMSVVSYDPNKHAG<PSF*APDTEIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 4 .86 RPM |
SRP012922_cerebellum | 0 .00 RPM | 7 .70 RPM |
SRP012922_heart | 0 .00 RPM | 3 .94 RPM |
SRP012922_kidney | 0 .00 RPM | 24 .37 RPM |
SRP012922_liver | 0 .00 RPM | 20 .28 RPM |
SRP012922_lung | 0 .00 RPM | 8 .71 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 3 .81 RPM |
SRP012922_spleen | 0 .00 RPM | 17 .86 RPM |