RetrogeneDB ID:

retro_nleu_682

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397269.1:30671038..30671554(-)
Located in intron of:ENSNLEG00000005782
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TPMT
Ensembl ID:ENSNLEG00000001548
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_682
GTAGAGATGAAACGGTTTGCAGACCAAGGACACAGTGTAGTTGGTGTATAAATCAGTGCACTTGGGATACGAGAATTTTT
TACAGAGCAGAATCTTTCTTACTCAGAAGAACCAATTAGCAAAGTTCCTGAAGACAAAGTATTTAAGAGTTCTTCAGAGA
ACATTTCATTGTACTGTTGCAGCATTTTTTATCTTCCCCAAACACAAATCGACAAATTTGACAGAATTTGGGATAGAGGA
GCACTGGCTGCCATTAATCTAGGAGATTTCAAACACTATGCAGATACAACGTTGTCCCTCCTGGGAAAAGGGTTTCAGTA
CCTCGTGTGTGTTCTTTCTTATGACCCAACTAAACATGCAGGCCCACTATCTTATGTTCCACATGCTGAAATTGAAAGGT
TGTTCAGTACAATATGCAATATTCATTGTCTTGAGAAGATTAATGCTTTTGAAGAACAACATGAAAGTTGGCAAATTGAC
TACATTTTTGAAAAGTTGGATCTACTTACAGAAAAG

ORF - retro_nleu_682 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.49 %
Parental protein coverage: 70.2 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVEMKWFADRGHSVIGVEISELGIREFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNI
VEMK.FAD.GHSV.GV.IS.LGIREFFTEQNLSYSEEPI...P..KVFKSSS.NISLYCCSIF.LP.T.I
RetrocopyVEMKRFADQGHSVVGV*ISALGIREFFTEQNLSYSEEPISKVPEDKVFKSSSENISLYCCSIFYLPQTQI
ParentalGKFDMIWDRGALVAINPGDRKCYADIMLSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGKICN
.KFD.IWDRGAL.AIN.GD.K.YAD..LSLLGK.FQYL.CVLSYDPTKH.GP..YVPHAEIERLF..ICN
RetrocopyDKFDRIWDRGALAAINLGDFKHYADTTLSLLGKGFQYLVCVLSYDPTKHAGPLSYVPHAEIERLFSTICN
ParentalICCLEKVDAFEERHKSWGIDYLFEKLYLLTEK
I.CLEK..AFEE.H.SW.IDY.FEKL.LLTEK
RetrocopyIHCLEKINAFEEQHESWQIDYIFEKLDLLTEK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_682 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 61 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG0000000867627 retrocopies
Callithrix jacchus ENSCJAG000000069062 retrocopies
Cavia porcellus ENSCPOG000000052951 retrocopy
Dasypus novemcinctus ENSDNOG000000048421 retrocopy
Homo sapiens ENSG000001373644 retrocopies
Gorilla gorilla ENSGGOG000000161554 retrocopies
Loxodonta africana ENSLAFG000000116321 retrocopy
Macaca mulatta ENSMMUG000000166273 retrocopies
Mus musculus ENSMUSG000000213761 retrocopy
Nomascus leucogenys ENSNLEG00000001548 4 retrocopies
Oryctolagus cuniculus ENSOCUG000000038542 retrocopies
Otolemur garnettii ENSOGAG000000077382 retrocopies
Pongo abelii ENSPPYG000000162634 retrocopies
Pan troglodytes ENSPTRG000000177565 retrocopies



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