RetrogeneDB ID: | retro_hsap_2781 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:42187140..42187863(-) | ||
Located in intron of: | ENSG00000182606 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000234562 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPMT | ||
Ensembl ID: | ENSG00000137364 | ||
Aliases: | None | ||
Description: | thiopurine S-methyltransferase [Source:HGNC Symbol;Acc:12014] |
Percent Identity: | 76.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MDGTRTSLDIEEYSDTEVQK-NQVLTLEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGL-RVFFP |
MD.TR.S.D.E.Y..TEV.K.NQV.TLEEWQDKWVNG..AFHQEQGHQLLK.HLDTFLKG.S.L.R.FF. | |
Retrocopy | MDDTRASFDMEKYPNTEVRK<NQVRTLEEWQDKWVNGNIAFHQEQGHQLLKTHLDTFLKGESRL>RYFFL |
Parental | LCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL |
L....VEMKWFAD.GH.VVGV.IS.LGIQEFFTEQNLSYSEEPI...P..KVFKSSS.NISLYCCSI..L | |
Retrocopy | L----VEMKWFADQGHNVVGV*ISALGIQEFFTEQNLSYSEEPISKVPEAKVFKSSSENISLYCCSIYYL |
Parental | PRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLF |
P.T.I.KFD.IWDRGAL.AIN.GD.K.YADTM.SLLGK.FQYL.CVLSYDPTKH.GP..YVPHAEIERLF | |
Retrocopy | PQTHIDKFDRIWDRGALAAINLGDFKHYADTMLSLLGKGFQYLECVLSYDPTKHAGPLAYVPHAEIERLF |
Parental | GKICNIRCLEKVDAFEERHKSWGIDCLFEKLYLLTEK |
..ICNI.CLE..D.FEE.H.SW.ID..FEKLYLLTEK | |
Retrocopy | STICNIHCLEMIDGFEEQHESWQIDYIFEKLYLLTEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .02 RPM | 14 .19 RPM |
bodymap2_adrenal | 0 .16 RPM | 19 .71 RPM |
bodymap2_brain | 0 .00 RPM | 36 .66 RPM |
bodymap2_breast | 0 .08 RPM | 13 .70 RPM |
bodymap2_colon | 0 .00 RPM | 25 .93 RPM |
bodymap2_heart | 0 .15 RPM | 23 .69 RPM |
bodymap2_kidney | 0 .15 RPM | 75 .30 RPM |
bodymap2_liver | 0 .00 RPM | 82 .51 RPM |
bodymap2_lung | 0 .12 RPM | 18 .13 RPM |
bodymap2_lymph_node | 0 .00 RPM | 17 .54 RPM |
bodymap2_ovary | 0 .13 RPM | 20 .43 RPM |
bodymap2_prostate | 0 .00 RPM | 29 .93 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 9 .22 RPM |
bodymap2_testis | 0 .00 RPM | 20 .66 RPM |
bodymap2_thyroid | 0 .00 RPM | 186 .88 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 47 .35 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1882 |
Gorilla gorilla | retro_ggor_1938 |
Pongo abelii | retro_pabe_2235 |
Macaca mulatta | retro_mmul_1445 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .07 RPM |
CEU_NA12004 | 0 .11 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .05 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .09 RPM |
CEU_NA12872 | 0 .05 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .06 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .05 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .07 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .14 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .08 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .04 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |