RetrogeneDB ID: | retro_hsap_4868 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:85383897..85384571(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000223574 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPMT | ||
Ensembl ID: | ENSG00000137364 | ||
Aliases: | None | ||
Description: | thiopurine S-methyltransferase [Source:HGNC Symbol;Acc:12014] |
Percent Identity: | 67.83 % |
Parental protein coverage: | 90.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | LTLEEWQDKWVNGKTAFHQE-QGHQLLKKHLDTFLKGKSGLRVFFPLCGKA--VEMKWFADRGHSVVGVE |
L..EE..D..V........E..G...L.KHLDTF.KG.SGLR.FFPL.GK...VEMKWFAD.GHS.VGV. | |
Retrocopy | LDIEEYSDTEVQKHQVLSLE>HGKTSLLKHLDTFHKGESGLRMFFPLYGKVLIVEMKWFADQGHSAVGVK |
Parental | ISELGIQEFFTEQ-NLSYSEEPITEIPGTK-VFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAI |
ISEL.IQEFFT.Q.NLSYSEEPIT.IP.TK...KSSSGNISLYCCSIF.LPRTNI.KFD.IW.RGALV.I | |
Retrocopy | ISELEIQEFFTQQ<NLSYSEEPITKIPETK<IYKSSSGNISLYCCSIFYLPRTNIDKFDRIWNRGALVTI |
Parental | NPG-DRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP-GPPF-YVPHAEIERLFGKICNIRCLEKVDAFEE |
NPG.D..C.A..M..LL.K.FQYL.CVLSYD..K....PPF.YVPHA.IERLFG.IC.I.CL...DAFEE | |
Retrocopy | NPG>DCECSASIMLFLLRKQFQYLMCVLSYDSSKNM>SPPF>YVPHA*IERLFGTICSIYCLGNADAFEE |
Parental | RHKSWGIDCLFEKLYLLTEK |
.HKSWGID..F.K..LLTEK | |
Retrocopy | QHKSWGIDYIFGKIDLLTEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 14 .19 RPM |
bodymap2_adrenal | 0 .00 RPM | 19 .71 RPM |
bodymap2_brain | 0 .00 RPM | 36 .66 RPM |
bodymap2_breast | 0 .00 RPM | 13 .70 RPM |
bodymap2_colon | 0 .00 RPM | 25 .93 RPM |
bodymap2_heart | 0 .00 RPM | 23 .69 RPM |
bodymap2_kidney | 0 .00 RPM | 75 .30 RPM |
bodymap2_liver | 0 .00 RPM | 82 .51 RPM |
bodymap2_lung | 0 .00 RPM | 18 .13 RPM |
bodymap2_lymph_node | 0 .00 RPM | 17 .54 RPM |
bodymap2_ovary | 0 .00 RPM | 20 .43 RPM |
bodymap2_prostate | 0 .00 RPM | 29 .93 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 9 .22 RPM |
bodymap2_testis | 0 .00 RPM | 20 .66 RPM |
bodymap2_thyroid | 0 .00 RPM | 186 .88 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 47 .35 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_3041 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |