RetrogeneDB ID: | retro_mmus_2738 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:65328221..65328939(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tpmt | ||
Ensembl ID: | ENSMUSG00000021376 | ||
Aliases: | None | ||
Description: | thiopurine methyltransferase [Source:MGI Symbol;Acc:MGI:98812] |
Percent Identity: | 84.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSLDMKEHPDAEVQKNQVLTLEDWKEKWVTRHISFHQEQGHQLLKKHLDTFLKGQSGLRVF-FPLCGKAV |
.SLDMKEHPDAEVQK..VLT.EDW..KWVTR...F.QEQG.QLL.K..DTFLKGQS.L.VF.FPLCGKAV | |
Retrocopy | ISLDMKEHPDAEVQKI*VLTVEDWQDKWVTRPMVFRQEQGYQLLQKCSDTFLKGQSRLGVF<FPLCGKAV |
Parental | EMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI-FDLPRANI |
.MKWF.D.GHTVVGVEIS.IGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI.FDLPRA.. | |
Retrocopy | AMKWFTDWGHTVVGVEISDIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI<FDLPRADV |
Parental | GKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGTKCS |
GKFDRIWDRGALVAINPGDHDRY.DIILS.L.KEFQYLV.VLSY.PTKH.GPPFYVP.AELKRLFGTKCS | |
Retrocopy | GKFDRIWDRGALVAINPGDHDRYSDIILSPLSKEFQYLVVVLSYAPTKHTGPPFYVPDAELKRLFGTKCS |
Parental | MQCLEEVDALEERHKAWGLDYLFEKLYLLTEK |
MQCLE.VD..EERHK.WG.DY.FEKLYLLTEK | |
Retrocopy | MQCLEGVDDFEERHKTWGIDYIFEKLYLLTEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 3 .32 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .82 RPM |
SRP007412_heart | 0 .00 RPM | 1 .21 RPM |
SRP007412_kidney | 0 .00 RPM | 25 .66 RPM |
SRP007412_liver | 0 .00 RPM | 16 .44 RPM |
SRP007412_testis | 0 .00 RPM | 2 .15 RPM |