RetrogeneDB ID: | retro_cpor_666 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_22:7374907..7375497(+) | ||
Located in intron of: | ENSCPOG00000003697 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPMT | ||
Ensembl ID: | ENSCPOG00000005295 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.61 % |
Parental protein coverage: | 79.01 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | HLDTFLKGESGLRVFFPLCGKAVEMKWFADLGHSVVGVEISELGIREF----FMEQNLTYSEEPITEIPG |
HLDTF.KGESG.R.FFPLCGKAVE.K..AD......G.......I.......FMEQNL..SEEPITEIP. | |
Retrocopy | HLDTFHKGESGPRLFFPLCGKAVERK*LADTVQITLGHSVAGVKISAWDTGIFMEQNLSSSEEPITEIPD |
Parental | AKVFKSSSGNILLYCCNIFDLPRANVGKFDRIWDRGAFVAVNPSDRGRYAGVMLSLLRKGFLYLMSVFSY |
.K.FK..SGNILLY.C.IF.L.RAN.GKFDRI..RGA...VNP.D.GR...VML.L.R.GFLYL.SVFSY | |
Retrocopy | TKMFKKFSGNILLYYCSIFHLSRANIGKFDRILNRGALISVNPGDLGRWTDVMLFLRRTGFLYLKSVFSY |
Parental | DPTKYEGPPFYVPHSEIQALFGTKCNILCLEKVDALEK-LNVGSDYFF-EKLYLLTEK |
DP.K....PFYV...EIQ.LFGTK.N..CLEKV...EK....G....F.EK.YLL.EK | |
Retrocopy | DPRKHGATPFYVSDFEIQTLFGTKYNVFCLEKVATIEK>QKIGNSLVF>EKFYLLKEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .90 RPM |
SRP017611_kidney | 0 .10 RPM | 1 .47 RPM |
SRP017611_liver | 0 .00 RPM | 0 .83 RPM |
SRP040447_lung | 0 .03 RPM | 1 .61 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 0 .22 RPM |