RetrogeneDB ID: | retro_mmul_2609 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:84945042..84945555(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPMT | ||
Ensembl ID: | ENSMMUG00000016627 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.29 % |
Parental protein coverage: | 68.98 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | LTLEEWQDKWVNGKTAFHLE-QGHQLLKKHLDTFLKDKSGLRVFFPLCGKA--VEMKWFANRGHSVIGVE |
L..EE..D..V.......LE..G...L.KHLDTFLK..SGLR..FPL.GK...VEMKWFA..GHS..GV. | |
Retrocopy | LAIEEYSDTEVQKHQVVSLE>HGKTSL*KHLDTFLKGESGLRMIFPLYGKVLVVEMKWFADQGHSAVGVK |
Parental | ISELGIREFFTEQ-NLSYTEEPITEIPGAK-VFKSSSGNISLYCCSIFDFPRTNIGKFDMIWDRGALVAI |
.SEL.I.EFFT.Q.NLSY.EEPITEIP..K...KSS.GNISLYCCSIF..PRTNIGKFD.IW.RGALV.I | |
Retrocopy | TSELEIQEFFTKQ<NLSYSEEPITEIPETK<IYKSSLGNISLYCCSIFYLPRTNIGKFDRIWNRGALVTI |
Parental | NPG-DRKRYADTMLSLLGKKFQYLLCVFSYDPTKH |
NPG.D....A..M..LL.K.FQ.L.CV.SYD..K. | |
Retrocopy | NPG>DYECSASIMSFLLRKGFQFLMCVLSYDSSKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 17 .26 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .63 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .82 RPM |
SRP007412_heart | 0 .00 RPM | 4 .18 RPM |
SRP007412_kidney | 0 .00 RPM | 53 .99 RPM |
SRP007412_liver | 0 .00 RPM | 13 .50 RPM |
SRP007412_testis | 0 .00 RPM | 0 .87 RPM |
Species | RetrogeneDB ID |
---|---|
Callithrix jacchus | retro_cjac_4192 |
Pongo abelii | retro_pabe_3786 |