RetrogeneDB ID: | retro_mmul_2576 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:49681349..49681815(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPMT | ||
Ensembl ID: | ENSMMUG00000016627 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.31 % |
Parental protein coverage: | 63.27 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | IGVEISELGIREFFTEQNLSYTEEPITEIPGAKVFKSSSG-NISLYCCSIFDFPRTNIGKFDMIWDRGAL |
.G.E...........EQNLSY.EEPIT.IPGAKVFKSS.G.NISLYCC.IF..PR.NIGKFD.I.DR.AL | |
Retrocopy | LGYEXXXXXXXXXXKEQNLSYSEEPITKIPGAKVFKSSLG>NISLYCCCIFYHPRANIGKFDRI*DRRAL |
Parental | VAINPGDRKRYADTMLSLLGKKFQYLLCVFSYDPTKHPGPPFYVPHAEIEKLLGKICNIHCLEKVNAFEE |
VAINPGD.K.YA..M.S.LGK.FQ.L..V.SYDPTKH.GPPF.V..AEIE.L....CNIHCLE.V.AFEE | |
Retrocopy | VAINPGDHKCYAVIMSSNLGKGFQNLMYVLSYDPTKHVGPPFCVLLAEIERLFSTVCNIHCLERVDAFEE |
Parental | RHKSWGIDYLFEKLYL |
.HKS.GIDY.F..LYL | |
Retrocopy | *HKSLGIDYIFKRLYL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 17 .26 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .63 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .82 RPM |
SRP007412_heart | 0 .00 RPM | 4 .18 RPM |
SRP007412_kidney | 0 .00 RPM | 53 .99 RPM |
SRP007412_liver | 0 .00 RPM | 13 .50 RPM |
SRP007412_testis | 0 .00 RPM | 0 .87 RPM |