RetrogeneDB ID: | retro_pabe_3786 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:84532870..84533538(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPMT | ||
Ensembl ID: | ENSPPYG00000016263 | ||
Aliases: | None | ||
Description: | thiopurine S-methyltransferase [Source:RefSeq peptide;Acc:NP_001125496] |
Percent Identity: | 65.79 % |
Parental protein coverage: | 89.8 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | LEEWQDKWVNGNTAFHQE-QGHRLLKKHLDTFLKGESGLRVFFPLCGKA--VEMKWFADRGHSVVGVEIS |
.EE..D..V........E..G...L.KHLDTF.KGESGL..FFPL.GK...VEMKWF...GHS.VGV.IS | |
Retrocopy | IEEYSDTEVQKHQVLSLE>HGKTSLLKHLDTFHKGESGLMMFFPLYGKVLTVEMKWFPYQGHSAVGVKIS |
Parental | ELGIREFFTEQ-NLSYSEEPVTEIPGTK-IFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINP |
.L.I.E.FTEQ.NLSYSEEP.T.IP.TK.I.KSSSGNISLYCCSIF.LPRTNI.KFD.IW.RGALV.INP | |
Retrocopy | *LEIQECFTEQ<NLSYSEEPITKIPETK<IYKSSSGNISLYCCSIFYLPRTNIDKFDRIWNRGALVTINP |
Parental | G-DRKCYADTMLSLLGKKFQYLLCVLSYDPTKHP-GPPF-YVPHAEIERLFGKICNIHCLEKVDAFEERH |
G.D..C.A..M..LL.K.FQYL.CVLSYD..K....PPF.YVPHA.IERLFG..C.I.C....DAFEE.H | |
Retrocopy | G>DCECSASIMSFLLRKRFQYLMCVLSYDSSKNM>SPPF>YVPHA*IERLFGTTCSIYCPGNADAFEEQH |
Parental | KSWGIDYLFEKLYLLTEK |
KSWGIDY.F.K..LLTEK | |
Retrocopy | KSWGIDYIFGKIDLLTEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 21 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .50 RPM |
SRP007412_heart | 0 .00 RPM | 6 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 38 .35 RPM |
SRP007412_liver | 0 .00 RPM | 15 .97 RPM |
Species | RetrogeneDB ID |
---|---|
Callithrix jacchus | retro_cjac_4192 |
Macaca mulatta | retro_mmul_2609 |