RetrogeneDB ID: | retro_mmul_1445 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:94441140..94441671(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPMT | ||
Ensembl ID: | ENSMMUG00000016627 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.32 % |
Parental protein coverage: | 73.88 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MDGSRTSLDIEEYSDTEVQK-NQVLTLEEWQDKWVNGKTAFHLEQGHQLLKKHLDTFLKDKSGL-RVFFP |
M...R.SLD.EEY..TEV.K.NQV.TLEEWQDKWVN..TAFH.EQGHQLL.KHLDTFLK..S.L.R.FF. | |
Retrocopy | MNDTRASLDMEEYPNTEVRK<NQVQTLEEWQDKWVNSNTAFHREQGHQLLNKHLDTFLKGESRL>RYFFL |
Parental | LCGKAVEMKWFANRGHSVIGVEISELGIREFFTEQNLSYTEEPITEIPGAKVFKSSSGNISLYCCSIFDF |
L....VEMKWFA..GHS..GV.IS.LGI.EFFTE.NLSY.EEPI.E.P.AKVFKSSS.NISLYCCSIF.. | |
Retrocopy | L----VEMKWFADQGHSIVGV*ISALGI*EFFTERNLSYSEEPISEVPEAKVFKSSSENISLYCCSIFYL |
Parental | PRTNIGKFDMIWDRGALVAINPGDRKRYADTMLSLLGKKFQYL |
P.T.I.KFD.IWDRGALVAIN.GD.K.YADTMLSLLGK.FQYL | |
Retrocopy | PQTHIDKFDRIWDRGALVAINLGDFKHYADTMLSLLGKGFQYL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 17 .26 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .63 RPM |
SRP007412_cerebellum | 0 .26 RPM | 13 .82 RPM |
SRP007412_heart | 0 .12 RPM | 4 .18 RPM |
SRP007412_kidney | 0 .12 RPM | 53 .99 RPM |
SRP007412_liver | 0 .04 RPM | 13 .50 RPM |
SRP007412_testis | 0 .00 RPM | 0 .87 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2781 |
Pan troglodytes | retro_ptro_1882 |
Gorilla gorilla | retro_ggor_1938 |
Pongo abelii | retro_pabe_2235 |