Parental gene:

TPMT, ENSCPOG00000005295

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_38:13202920..13217292(-)


>ENSCPOG00000005295
ATGGATGATACAAAAACTTCAGTTGATACTAAAGAGCACCCTGATAGTGAGGTACAGAAATATCGAGTCATAACCCTGAA
AGAGTGGCAGGACAACTGGGTAAATCACAAAATTGGATTTCATCAAGCCGAAGGACATCAGCTATTAAGGAAGCATTTGG
ATACTTTTCTTAAAGGGGAGAGTGGACTGAGAGTGTTTTTTCCTCTTTGTGGAAAAGCAGTGGAGATGAAATGGTTTGCA
GATCTGGGACACAGTGTAGTTGGTGTTGAAATCAGTGAACTTGGAATACGGGAATTTTTTATGGAGCAGAACCTTACTTA
CTCAGAAGAACCAATCACTGAAATTCCTGGTGCAAAAGTATTTAAGAGTTCTTCAGGGAATATTTTGCTGTACTGCTGCA
ACATTTTTGATCTGCCCAGAGCAAATGTTGGTAAATTTGACAGGATTTGGGATAGAGGAGCATTTGTCGCTGTGAATCCA
AGTGACCGAGGACGCTACGCAGGTGTGATGCTGTCCCTCCTGAGGAAAGGGTTTCTCTACCTCATGTCTGTTTTCTCTTA
TGACCCAACAAAATACGAAGGCCCACCATTTTATGTTCCACATTCTGAAATTCAAGCACTCTTTGGTACAAAATGCAACA
TTCTTTGCCTTGAAAAGGTTGATGCTCTTGAAAAACTGAATGTGGGAAGTGACTACTTTTTTGAAAAATTGTATCTGCTG
ACAGAAAAGTAG

Library Parental gene expression (RPM)
SRP017611_liver 0 .83 RPM
SRP017611_kidney 1 .47 RPM
SRP017611_brain 1 .90 RPM
SRP040447_lung 1 .61 RPM
SRP040447_skeletal_muscle 0 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000008676 ortholog_one2one 27 retrogenes
retro_chof_1029, retro_chof_1047, retro_chof_1184, retro_chof_1209, retro_chof_1425, retro_chof_1451, retro_chof_1483, retro_chof_1498, retro_chof_168, retro_chof_1830, retro_chof_1946, retro_chof_195, retro_chof_2039, retro_chof_2203, retro_chof_2543, retro_chof_2562, retro_chof_2649, retro_chof_330, retro_chof_503, retro_chof_626, retro_chof_637, retro_chof_684, retro_chof_743, retro_chof_761, retro_chof_78, retro_chof_79, retro_chof_921,
Callithrix jacchus ENSCJAG00000006906 ortholog_one2one 2 retrogenes
retro_cjac_1617, retro_cjac_4192,
Dasypus novemcinctus ENSDNOG00000004842 ortholog_one2one 1 retrogene
retro_dnov_965,
Homo sapiens ENSG00000137364 ortholog_one2one 4 retrogenes
retro_hsap_1884, retro_hsap_2781, retro_hsap_4835, retro_hsap_4868,
Gorilla gorilla ENSGGOG00000016155 ortholog_one2one 4 retrogenes
retro_ggor_1381, retro_ggor_1938, retro_ggor_3014, retro_ggor_3041,
Loxodonta africana ENSLAFG00000011632 ortholog_one2one 1 retrogene
retro_lafr_438,
Macaca mulatta ENSMMUG00000016627 ortholog_one2one 3 retrogenes
retro_mmul_1445, retro_mmul_2576, retro_mmul_2609,
Mus musculus ENSMUSG00000021376 ortholog_one2one 1 retrogene
retro_mmus_2738,
Nomascus leucogenys ENSNLEG00000001548 ortholog_one2one 4 retrogenes
retro_nleu_1806, retro_nleu_2001, retro_nleu_2710, retro_nleu_682,
Oryctolagus cuniculus ENSOCUG00000003854 ortholog_one2one 2 retrogenes
retro_ocun_1255, retro_ocun_1370,
Otolemur garnettii ENSOGAG00000007738 ortholog_one2one 2 retrogenes
retro_ogar_1972, retro_ogar_701,
Pongo abelii ENSPPYG00000016263 ortholog_one2one 4 retrogenes
retro_pabe_1563, retro_pabe_2235, retro_pabe_3758, retro_pabe_3786,
Pan troglodytes ENSPTRG00000017756 ortholog_one2one 5 retrogenes
retro_ptro_1265, retro_ptro_1882, retro_ptro_3217, retro_ptro_3218, retro_ptro_3243,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_666 60.61 79.01
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Download FASTA sequences of all ENSCPOG00000005295 retrocopies