RetrogeneDB ID: | retro_fcat_1146 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:180556643..180557075(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000026840 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIA | ||
Ensembl ID: | ENSFCAG00000009159 | ||
Aliases: | PPIA, MT-ND1, MTND1, NADH1, ND1, cypA | ||
Description: | Peptidyl-prolyl cis-trans isomerase A [Source:UniProtKB/Swiss-Prot;Acc:Q8HXS3] |
Percent Identity: | 81.94 % |
Parental protein coverage: | 93.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VLQLFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFIL |
.LQ..A.KVPKTA.NF.ALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT.H...G.K.I.GEKFDD.NFIL | |
Retrocopy | LLQAVAHKVPKTADNFCALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTCHHNIGSKPINGEKFDDDNFIL |
Parental | KHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGMVKEGMNIVEAMERFGSRNGKTSKKITIAD |
KHT.PGILS..N.GPNTNGSQFFICTAKT.WLDGKHVVF..VKEGMNIVEA.E.FGSRNGKTS.KITIAD | |
Retrocopy | KHTDPGILSIVNTGPNTNGSQFFICTAKTKWLDGKHVVFCKVKEGMNIVEARECFGSRNGKTSGKITIAD |
Parental | CGQI |
.GQ. | |
Retrocopy | YGQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 129 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 193 .34 RPM |
SRP017611_liver | 0 .00 RPM | 71 .07 RPM |